Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11330 307 / 2e-95 S-locus lectin protein kinase family protein (.1.2) AT1G61610 295 / 5e-91 S-locus lectin protein kinase family protein (.1) AT4G21380 281 / 1e-85 ARK3 receptor kinase 3 (.1) AT1G61480 280 / 2e-85 S-locus lectin protein kinase family protein (.1) AT1G65800 280 / 3e-85 ARK2 receptor kinase 2 (.1) AT1G61490 279 / 3e-85 S-locus lectin protein kinase family protein (.1) AT1G61370 279 / 4e-85 S-locus lectin protein kinase family protein (.1) AT1G65790 278 / 1e-84 ARK1 receptor kinase 1 (.1) AT1G61430 277 / 2e-84 S-locus lectin protein kinase family protein (.1) AT1G11350 277 / 2e-84 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031603 [exp] 774 / 0 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033741 [exp] 713 / 0 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10033743 [exp] 639 / 0 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10025891 [exp] 620 / 0 AT4G21380 593 / 0.0 receptor kinase 3 (.1) Lus10039733 [exp] 468 / 2e-157 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039767 [exp] 468 / 6e-157 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 466 / 6e-157 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039731 [exp] 461 / 9e-148 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018516 [exp] 458 / 4e-147 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G150900 [exp] 364 / 2e-117 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120300 [exp] 346 / 1e-110 AT4G21380 630 / 0.0 receptor kinase 3 (.1) Potri.011G125601 [exp] 316 / 6e-99 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 312 / 1e-97 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125801 [exp] 306 / 3e-97 AT4G27290 659 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027800 [exp] 310 / 1e-96 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027400 [exp] 308 / 4e-96 AT1G11330 872 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G027900 [exp] 308 / 6e-96 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413700 [exp] 307 / 1e-95 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125401 [exp] 306 / 2e-95 AT4G27290 824 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Lus10015422 pacid=23160877 polypeptide=Lus10015422 locus=Lus10015422.g ID=Lus10015422.BGIv1.0 annot-version=v1.0 ATGGCTGATCCTCTATGTAGTTGTGCACCCGGGTTTATTCCGAAAGCAGAGAAAGAATGGAGTCTGGGAAATTTCTCCAGGGGTTGCCAGAGGAAGTCTA GTTTGGGATGCAGGAATTCTGAAGGAGGTAATGATTCCAATGGTGATATGTTTGTTCCAGGATATGGGTTAAATGATCTGGATGGGCAGTCGTCAATTGA GGGTTTAAGTTTTGTTGGTAGTTGTCAGCTTTGTGAATCGGTTTGCTCTTCTAGCTGCAATTGTACTGCTTATTTTTATCAGAGCAATAGGTGTTCCATT TGGTCAGGGGACGTTCGTAATCTCCACAAACTCGGTAAAGATCAGTACAATCAATCTGTATACATAAGGATTGCAGGTTCTAAGAAACTTGATAATGTTA TAAAGAATCCTGACCATGTTCAGAGTAGTAGAAAAAATAGACAATTGATTATTGGGGTTATTGTTGGCTCTGTGGTGGGTGGTATTCTAGTTAGCCTTCT GGGTTTGTTCTTGATATTGAGAAGATATAGTACGCGGAAAGCGGCAGCGAACATGGCTGAGATTGAGCAGAATAAGTATGGAGATGGCCAAAGTGATTCC CAGTTGATCTTTTTCAGCTTTAAGGATGTATTGGCTGCTACTGATAACTTCTCTGAATCTAACAAATTGGGAGAGGGTGGGTTTGGCCCTGTCTACAAGC ATACTTATTTGGTTAAGCTTTTGGGGTGCTGTGTTGAGAGGGAAGAAAAGATACTGATATATGAGTACATGCCTAATAAGAGCCTGGACACGGTCACTGA TAAGGCGAAGCTAGACTGGGGAAAACGAGTAAAAATCGTGGAAGTTGTAGCTCAAGGATTGCTATACATCCACAAGTATTCAAGGCTGAAAGTCATTCAC AGGGACATGAAGACGAGCAATGTTCTGCTGGACGCAGCCATGAATCCCAAGATATCAGATTTTGGGATGCACGGATTTTTGGGATTGATCAGGATGAAGC AAGCACCAACCGTATATGGATATATGTCTCCTGAATACGCAAATTACGGGCAGTTCTCGGAGAAATCTGACGTGTATAGCTTTGGAGTGTTGTTATTGGA GATAGTGAGTGGAAAGAGGAACAGAGATTTCTATTATCGCGAAATCCCATTCTCCCTTCTATGTTGGGTGTGGGAGCTATGGAAAGAAGGGACACCTCAA GAGCTGATTGACCCAGCAGTGAAGAGCAGCCCCTGCTGTAATCCAACTGAAGCTGTAAAGTTCATCCAAGTGGGTCTTTTGTGTGTGCAAGATTCTCCAG CTGATAGGCCAACAATGTCTTCAGTGACTCAGATGTTGTTGAGTAACGATTCTCAGTCATTCCTGCCACCTGGAGAACCGGCCTTCATCACTAGGAGAGG TGCTCATCCTGTGTTCAGTTATGAATTTCCCTCGACTTGCTCAAACCAGGTTAGAATGAGCTATCCAATTGGCAGATGA
AA sequence Show only first row Show all	>Lus10015422 pacid=23160877 polypeptide=Lus10015422 locus=Lus10015422.g ID=Lus10015422.BGIv1.0 annot-version=v1.0 MADPLCSCAPGFIPKAEKEWSLGNFSRGCQRKSSLGCRNSEGGNDSNGDMFVPGYGLNDLDGQSSIEGLSFVGSCQLCESVCSSSCNCTAYFYQSNRCSI WSGDVRNLHKLGKDQYNQSVYIRIAGSKKLDNVIKNPDHVQSSRKNRQLIIGVIVGSVVGGILVSLLGLFLILRRYSTRKAAANMAEIEQNKYGDGQSDS QLIFFSFKDVLAATDNFSESNKLGEGGFGPVYKHTYLVKLLGCCVEREEKILIYEYMPNKSLDTVTDKAKLDWGKRVKIVEVVAQGLLYIHKYSRLKVIH RDMKTSNVLLDAAMNPKISDFGMHGFLGLIRMKQAPTVYGYMSPEYANYGQFSEKSDVYSFGVLLLEIVSGKRNRDFYYREIPFSLLCWVWELWKEGTPQ ELIDPAVKSSPCCNPTEAVKFIQVGLLCVQDSPADRPTMSSVTQMLLSNDSQSFLPPGEPAFITRRGAHPVFSYEFPSTCSNQVRMSYPIGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11330			S-locus lectin protein kinase ...		Lus10015422 [exp]	0	1
					Lus10042562 [exp]	1.0	0.9450
AT5G12040			Nitrilase/cyanide hydratase an...		Lus10025012 [exp]	2.0	0.9254
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10041854 [exp]	2.4	0.9188
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10005091 [exp]	3.5	0.9254
AT2G17787			unknown protein		Lus10013567 [exp]	3.5	0.9246
AT5G06830			unknown protein		Lus10016277 [exp]	5.9	0.9148
					Lus10014678 [exp]	6.7	0.9203
AT1G78070			Transducin/WD40 repeat-like su...		Lus10036428 [exp]	7.7	0.8967
AT1G45150			unknown protein		Lus10002387 [exp]	9.3	0.8821
AT2G17787			unknown protein		Lus10017274 [exp]	10.4	0.9063

Compare expression of checked genes

Lus10015422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.