Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60200 122 / 3e-33 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT1G51700 116 / 7e-32 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT2G28810 118 / 3e-31 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT5G65590 118 / 3e-31 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT1G07640 116 / 5e-31 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT1G28310 117 / 6e-31 DOF AtDof1. 4 Dof-type zinc finger DNA-binding family protein (.1.2) AT3G45610 113 / 5e-30 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT5G66940 112 / 5e-30 DOF AtDof5. 8 Dof-type zinc finger DNA-binding family protein (.1) AT3G50410 113 / 6e-30 DOF OBP1, AtDof3. 4 OBF binding protein 1 (.1) AT2G37590 114 / 9e-30 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014001 [exp] 400 / 5e-142 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10025340 [exp] 120 / 3e-31 AT2G37590 182 / 4e-54 DNA binding with one finger 2.4 (.1) Lus10029458 [exp] 116 / 2e-30 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10014002 [exp] 112 / 6e-30 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1) Lus10025707 [exp] 115 / 1e-29 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10005956 [exp] 114 / 1e-29 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3) Lus10016566 [exp] 114 / 2e-29 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10034652 [exp] 111 / 6e-29 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10002381 [exp] 112 / 1e-28 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G055600 [exp] 128 / 1e-34 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.004G046600 [exp] 126 / 4e-34 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.003G034200 [exp] 119 / 3e-32 AT1G51700 136 / 7e-40 DOF zinc finger protein 1 (.1) Potri.005G134200 [exp] 119 / 2e-31 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.007G038100 [exp] 118 / 3e-31 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.007G036400 [exp] 116 / 5e-31 AT3G50410 170 / 2e-52 OBF binding protein 1 (.1) Potri.001G238400 [exp] 116 / 2e-30 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.005G149100 [exp] 116 / 3e-30 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G131600 [exp] 114 / 3e-30 AT3G50410 126 / 3e-35 OBF binding protein 1 (.1) Potri.012G063800 [exp] 115 / 5e-30 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10015425 pacid=23160848 polypeptide=Lus10015425 locus=Lus10015425.g ID=Lus10015425.BGIv1.0 annot-version=v1.0 ATGGAAAACCCAATCTCCTCCTCCTCCGCCGCCGCCGGCGGCCAAGACAACAACAACCAGCCGCCGCAGCTGAGGTGTCCACGTTGCGACTCCTCCAACA CAAAGTTCTGCTACTACAACAACTACAGCCTCTCCCAGCCCCGCCACTTCTGCAAGTCCTGCAAGCGCTACTGGACACGTGGCGGCACCTTACGCAACGT CCCCGTCGGCGGCGGCTGCCGCAAGAACCACAAGCGCCCCAACAACTCAACCTCCGCCGCCAACAAACGCCTCCCTCTCCCTCTCCCTTCCTCCTCCTCC TCCGCCACGTCAACCCTCGTGCTAGAAAGCCCTAACCATCACAACAACCAAATCAATAATCCCCTGCTTTACGGTCTACAGCATTACCCTGCACCCGAGG CGTCCTCTCATCATCCTCACCATCTAGTCAGCTCTTTCTCATCTAACGGATTAGGATACTCCGGGATCTCTCCCAGCATGGCGACACTGCTGGCGTCCAC GCTGAACAACAAGTTCTCCTCCTCATCAACCTCCTCAAATGGCATCGTTAAACCCGACCATTACTCGGCCGGGTTTGAAGGGTTGCAAATGGGGATTCAT GGAGGAGTCAAGGCTCATTATCAGGAGCAAGGGCAGGATTGGAATATCAACAATTTCGGCAATAATCAGAATAATTTGGGGTGGGGACAGGTTCTGATGA ATGATCATCATCATCACCATAACCAGGTGGTGGAGGGAGTCGGGTCGGGTCAGGAACCGGGTTACTGGACCGGGTTGTGGAGCGATCCGGGGAGCAATAA CATTGGTCCTTCTGTCACGTCCTTGATCTAG
AA sequence Show only first row Show all	>Lus10015425 pacid=23160848 polypeptide=Lus10015425 locus=Lus10015425.g ID=Lus10015425.BGIv1.0 annot-version=v1.0 MENPISSSSAAAGGQDNNNQPPQLRCPRCDSSNTKFCYYNNYSLSQPRHFCKSCKRYWTRGGTLRNVPVGGGCRKNHKRPNNSTSAANKRLPLPLPSSSS SATSTLVLESPNHHNNQINNPLLYGLQHYPAPEASSHHPHHLVSSFSSNGLGYSGISPSMATLLASTLNNKFSSSSTSSNGIVKPDHYSAGFEGLQMGIH GGVKAHYQEQGQDWNINNFGNNQNNLGWGQVLMNDHHHHHNQVVEGVGSGQEPGYWTGLWSDPGSNNIGPSVTSLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10015425 [exp]	0	1
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Lus10025340 [exp]	9.6	0.7346
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10014001 [exp]	10.3	0.7254
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Lus10042114 [exp]	10.8	0.6614
AT3G11110			RING/U-box superfamily protein...		Lus10040942 [exp]	14.3	0.6674
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10035600 [exp]	17.1	0.7035
AT1G11915			unknown protein		Lus10023362 [exp]	23.7	0.7063
AT3G07260	FHA		SMAD/FHA domain-containing pro...		Lus10038196 [exp]	29.1	0.6628
AT2G27770			Plant protein of unknown funct...		Lus10009405 [exp]	36.9	0.6531
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10009147 [exp]	43.2	0.6457
AT3G52490			Double Clp-N motif-containing ...		Lus10021291 [exp]	49.5	0.6587

Compare expression of checked genes

Lus10015425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.