Plant FIBer expression Database

Lus10015426 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014003
[exp]
214 / 2e-72 ND 37 / 9e-04
Lus10014004
[exp]
47 / 8e-07 AT4G21020 99 / 2e-24 Late embryogenesis abundant protein (LEA) family protein (.1)
Lus10015427
[exp]
47 / 1e-06 AT4G21020 99 / 1e-24 Late embryogenesis abundant protein (LEA) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G054200
[exp]
43 / 2e-05 AT4G21020 96 / 1e-23 Late embryogenesis abundant protein (LEA) family protein (.1)
PFAM info
Representative CDS sequence
>Lus10015426 pacid=23160894 polypeptide=Lus10015426 locus=Lus10015426.g ID=Lus10015426.BGIv1.0 annot-version=v1.0
ATGGCCGGTTTACCAATGATGACCAAAACCTCCGTCCTCAGCCCTTCCATGGCTTTCCCCAGGTCCCAATCGTCGCCTTCCGGCCCCCGCAGCAACATCC
CCGCTTGGCAGAAGTTGTCCCGGGTTTCGTTCACTGCTTTATCGGCCGCCAAAGAGGACGCTCCCAAAGGATCGACGGACCTATTGAAGGAGAGTCTCGA
CGGGGTGGCGAGTGCAGTTTCTAAGAAGTTCGAGGAAGACGCCAGCACGGCCAAGGACTTGAAGGCGAAGGCGGAGGGAGATGTCGAGAAGGCGGGCGGG
AAGGCACAAGAGATACACGAGGTGTTGAAGGAAGCCGGAGAAACAGCCGCCGATAAGGCGAAGAAGGATGTGGAGGGCGCGTGGGACGCCGCGAAAGGCA
CGTCGGATAAGATTCTGGAGACTTTGTCCGGCAAGGACGGCGACAAGAAGTGA
AA sequence
>Lus10015426 pacid=23160894 polypeptide=Lus10015426 locus=Lus10015426.g ID=Lus10015426.BGIv1.0 annot-version=v1.0
MAGLPMMTKTSVLSPSMAFPRSQSSPSGPRSNIPAWQKLSRVSFTALSAAKEDAPKGSTDLLKESLDGVASAVSKKFEEDASTAKDLKAKAEGDVEKAGG
KAQEIHEVLKEAGETAADKAKKDVEGAWDAAKGTSDKILETLSGKDGDKK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10015426
[exp]
0 1
AT5G13630 ABAR, CHLH, CCH... ABA-BINDING PROTEIN, magnesium... Lus10018068
[exp]
2.4 0.9012
AT5G13630 ABAR, CHLH, CCH... ABA-BINDING PROTEIN, magnesium... Lus10018067
[exp]
3.9 0.8797
AT5G13630 ABAR, CHLH, CCH... ABA-BINDING PROTEIN, magnesium... Lus10042061
[exp]
5.3 0.8792
AT3G14770 SWEET2, AtSWEET... Nodulin MtN3 family protein (.... Lus10005411
[exp]
6.3 0.8832
AT2G20340 Pyridoxal phosphate (PLP)-depe... Lus10039740
[exp]
8.7 0.8770
AT2G36885 unknown protein Lus10013829
[exp]
9.5 0.8346
AT2G45960 PIP1;2, ATHH2, ... TRANSMEMBRANE PROTEIN A, NAMED... Lus10014840
[exp]
11.0 0.8203
AT4G16740 ATTPS03 terpene synthase 03 (.1.2) Lus10018501
[exp]
11.7 0.8310
AT5G13930 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE ... Lus10041508
[exp]
12.4 0.8360
AT5G51160 Ankyrin repeat family protein ... Lus10029008
[exp]
12.6 0.8444

Lus10015426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.