Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014004 [exp] 244 / 3e-80 AT4G21020 99 / 2e-24 Late embryogenesis abundant protein (LEA) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G054200 [exp] 79 / 6e-17 AT4G21020 96 / 1e-23 Late embryogenesis abundant protein (LEA) family protein (.1) Potri.004G046000 [exp] 56 / 3e-09 AT4G21020 64 / 4e-12 Late embryogenesis abundant protein (LEA) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015427 pacid=23160906 polypeptide=Lus10015427 locus=Lus10015427.g ID=Lus10015427.BGIv1.0 annot-version=v1.0 ATGGCCATGTTGACCAGAAGCGCCATGTTCTGCCTCTCTAAGGCTTCCCAACAATCTGCAGCAACCCTCTTCCATGGCGGCCCTAGTGCCTGGCCCAAGT TCGCCCGAGTTTCGTTCTCGTCCTCCGCCTCGAAATCGACCTACAACCAGGGTTGGAATGCGGCGGACCACAACAAAGACTCAGACAACTTTGCTGACAA GGCGAACCAGAAGGCGGAGCAGGCAAAGAACAAGTCTGATGACCTAACCGACAAGGCCAGGGAACGAGCCGAGGAAATGAAGGAAAGCGGCAAAGAGTAC GCGCACGAGACCAAGGAGAGCGCGAAGCATGCCACACGAGCGGCCTCTGAGAAGGTGAAGGAGGGGGTGTACAAGGCGGAGGAAGCAACCGACAGCACCA AGGAGCAGGCCAAGGACTATGCTTATGAAACCAAGGAGAAGGCCAAGGAGACTGGGGAAAAGGCGGCCGACAAGGCGCACGAGGCGAAAGAGACAGTGAA GGATTATGCTTATGACGCTAAGGAGAAGGCCAAGGAGACTGGAGAGAAAGCAGCCGACAAGGCAAAGGAGACGGCGGAGAGGACGAAGGATGCGGCTGGG TCGGCCACCGAGAAGGCAAAAGAGGCCGTAAAGGGCGCGTGGGAGGCGGCCAAGGATACGACGAATAAGATCAAGGAGACGGTGGTCGGGAAGGATGATA AGGATGATGATTTGACGAGCAGTGGGACTAGTAGCGATGAGGATGATGATCGGAAAGGGTGGAAGACGATGGATGCTGACGTGGCGGATCTCAGGCGACG AGCCGGCGGCGGTGGAAAGGATGGTAAAAAGTATTGA
AA sequence Show only first row Show all	>Lus10015427 pacid=23160906 polypeptide=Lus10015427 locus=Lus10015427.g ID=Lus10015427.BGIv1.0 annot-version=v1.0 MAMLTRSAMFCLSKASQQSAATLFHGGPSAWPKFARVSFSSSASKSTYNQGWNAADHNKDSDNFADKANQKAEQAKNKSDDLTDKARERAEEMKESGKEY AHETKESAKHATRAASEKVKEGVYKAEEATDSTKEQAKDYAYETKEKAKETGEKAADKAHEAKETVKDYAYDAKEKAKETGEKAADKAKETAERTKDAAG SATEKAKEAVKGAWEAAKDTTNKIKETVVGKDDKDDDLTSSGTSSDEDDDRKGWKTMDADVADLRRRAGGGGKDGKKY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21020			Late embryogenesis abundant pr...		Lus10015427 [exp]	0	1
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10003644 [exp]	4.6	0.7437
AT5G01750			Protein of unknown function (D...		Lus10014154 [exp]	6.0	0.7192
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10035218 [exp]	7.9	0.6774
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10037137 [exp]	8.1	0.7207
AT4G38260			Protein of unknown function (D...		Lus10012254 [exp]	12.3	0.5692
AT5G66780			unknown protein		Lus10014313 [exp]	13.4	0.7234
AT2G46150			Late embryogenesis abundant (L...		Lus10039664 [exp]	17.0	0.6835
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10010054 [exp]	20.7	0.6576
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10041082 [exp]	21.8	0.6433
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10010330 [exp]	22.0	0.6334

Compare expression of checked genes

Lus10015427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.