Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28300 137 / 1e-37 B3 LEC2 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) AT3G24650 110 / 9e-27 B3 SIS10, ABI3 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) AT3G26790 92 / 3e-21 B3 FUS3 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) AT2G30470 76 / 3e-15 B3 HSI2, VAL1 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) AT4G32010 75 / 9e-15 B3 HSL1, HSI2-L1, VAL2 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) AT4G21550 61 / 2e-10 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1) AT1G68840 47 / 6e-06 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT4G01500 47 / 9e-06 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT1G13260 45 / 3e-05 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT1G25560 45 / 4e-05 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014005 [exp] 311 / 1e-106 AT1G28300 79 / 1e-16 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Lus10022820 [exp] 113 / 1e-28 AT3G24650 313 / 1e-100 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10011888 [exp] 108 / 4e-26 AT3G24650 312 / 6e-96 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10041521 [exp] 96 / 9e-23 AT3G26790 255 / 1e-83 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10012572 [exp] 94 / 7e-22 AT3G26790 259 / 4e-85 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10011245 [exp] 83 / 2e-17 AT2G30470 399 / 1e-122 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Lus10018440 [exp] 82 / 3e-17 AT4G32010 487 / 1e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025226 [exp] 78 / 9e-16 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025142 [exp] 77 / 2e-15 AT4G32010 794 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G045800 [exp] 187 / 2e-56 AT1G28300 201 / 2e-60 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Potri.011G054000 [exp] 179 / 5e-53 AT1G28300 154 / 5e-43 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Potri.002G252000 [exp] 112 / 2e-27 AT3G24650 499 / 2e-167 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Potri.017G061200 [exp] 97 / 4e-23 AT3G26790 288 / 8e-97 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.001G322700 [exp] 96 / 1e-22 AT3G26790 279 / 3e-93 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.016G136500 [exp] 81 / 6e-17 AT4G32010 789 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.019G130300 [exp] 80 / 2e-16 AT2G30470 757 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.013G157500 [exp] 79 / 2e-16 AT2G30470 767 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.006G108300 [exp] 77 / 2e-15 AT4G32010 743 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.004G035300 [exp] 75 / 7e-15 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10015428 pacid=23160900 polypeptide=Lus10015428 locus=Lus10015428.g ID=Lus10015428.BGIv1.0 annot-version=v1.0 ATGGAGTCCAACCATCAACCCAGCATCCCACCACCACCACCACCAACTCACCATGACTCGGAGGCACTGACTCAGTTCTACCCTTCAGTCCCCATTCAAG CTGCTCTACCCTCTCCTCATCTTGAAGGGGCAAATTGGTCTCAAGAGCAAGAGAACAAGAAGGTTGTGGATGCTTTAAAGACCAAGCTTGCTAGAACCAA GAGGAAATTGGCTAGGCAAAGAAGCCTCTTGAACAAATCCATTGCCTCTGCTTCTTCTGTTGGGAGTAATCGTAATCCTGTTGAGCAACGGATTAGGAGT GTAGTGAGGACTGAAAGGAGCCGTTTGTTGTTTGATTTCTTCACTCCCGACAACAAGAGACTGAGGTTGCTGTTGAAGAAGGTTCTGAGGAAGAGTGACG TTGGTGCTCTTGGGAGGATTGTGCTTCCTAAGAAGGAGACTGAAGAAAACCTTCCTTATCTCCATGAAAAAGAAGGAATTCATATTGTGATCAGAGATGT CTACTCAACCCAAGAATGGACCGTAAAATTCAAGTTCTGGATTAATAACAAGAGCAGGATGTACGTCCTCGAAAACGCAGGGGAATTTGTGAGGGAGAAT GGGCTTGAGAGTGGGGATTGTTTGAACTTATTTGAAGATGAGAGCGGCAAATTCTATTACATATTCCAAAAAGTAATCAGACCTCAAGAAACTCAACCAA CAAATCAGTTCTATTACCAGACTAATGAAGCTAGAGAGGAAGAAGACGCATCATTAGCTGTACTCATCGAGCAACTCAAACACAGAGAACACATGGAGGA AGAAGAAACTCGAAACCTCTTGAACATTACTTCTTGTCCTCCAACCAACTATGCTCAAACCTATGGATTGAGTACCAACAGCCATCCATAG
AA sequence Show only first row Show all	>Lus10015428 pacid=23160900 polypeptide=Lus10015428 locus=Lus10015428.g ID=Lus10015428.BGIv1.0 annot-version=v1.0 MESNHQPSIPPPPPPTHHDSEALTQFYPSVPIQAALPSPHLEGANWSQEQENKKVVDALKTKLARTKRKLARQRSLLNKSIASASSVGSNRNPVEQRIRS VVRTERSRLLFDFFTPDNKRLRLLLKKVLRKSDVGALGRIVLPKKETEENLPYLHEKEGIHIVIRDVYSTQEWTVKFKFWINNKSRMYVLENAGEFVREN GLESGDCLNLFEDESGKFYYIFQKVIRPQETQPTNQFYYQTNEAREEEDASLAVLIEQLKHREHMEEEETRNLLNITSCPPTNYAQTYGLSTNSHP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10015428 [exp]	0	1
					Lus10003695 [exp]	2.0	1.0000
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008978 [exp]	3.2	1.0000
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040724 [exp]	3.9	1.0000
					Lus10020958 [exp]	4.5	1.0000
					Lus10021906 [exp]	5.0	1.0000
AT1G10385			Vps51/Vps67 family (components...		Lus10017692 [exp]	5.1	0.9159
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041633 [exp]	5.5	1.0000
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	7.0	1.0000
AT4G16260			Glycosyl hydrolase superfamily...		Lus10039233 [exp]	7.7	0.8319
					Lus10024734 [exp]	7.7	0.9033

Compare expression of checked genes

Lus10015428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.