Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32420 42 / 0.0004 F-box and associated interaction domains-containing protein (.1) AT2G02030 41 / 0.0007 F-box family protein (.1) AT3G22700 41 / 0.001 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011186 [exp] 185 / 4e-56 AT3G06240 45 / 3e-05 F-box family protein (.1) Lus10018460 [exp] 184 / 5e-55 AT1G32420 66 / 9e-12 F-box and associated interaction domains-containing protein (.1) Lus10034309 [exp] 113 / 3e-28 AT4G38870 84 / 4e-18 F-box and associated interaction domains-containing protein (.1) Lus10038938 [exp] 93 / 7e-21 AT1G49790 63 / 7e-11 F-box associated ubiquitination effector family protein (.1.2) Lus10011218 [exp] 74 / 8e-16 ND / Lus10014979 [exp] 64 / 3e-11 AT1G33530 57 / 6e-09 F-box family protein (.1) Lus10018446 [exp] 54 / 2e-08 ND 38 / 0.002 Lus10013934 [exp] 0 / 1 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10022939 [exp] 0 / 1 AT1G52490 56 / 2e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014300 [exp] 43 / 0.0002 AT3G16210 88 / 6e-19 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015432 pacid=23160867 polypeptide=Lus10015432 locus=Lus10015432.g ID=Lus10015432.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAGCCACTATTCAGAACGCACGGAGTGTGGAAGTGCCAAGTCGATATACTCAAATTAATGGACCAGTTAGGGGATTGCTCTGTTTCTTTGA CGGATATGACGTACGGATTTACAACGTCGGCACCAGACAATTTGCCACACCGTGGATCAGATCTACGGTCTCCAGGAGTCGTCGAGAGGACAGACCGATA TGTGAATTTGGATTCGATCCCGATACGGGAGAGCATAAAATTATCTTGGTTTGGCAAGGTTCATCTGGAAAAACAAGCTTGTTGTGAGGTGTTGACAGTA GGGGTTGACTCTAGTTGGAGAGTAATTGATGTTGTAATACCTAAACGCTATTTCATCGAATACAGCCGTACTTATGTCAATGGTTCCATCTATTGGTTGA TAGAAGACAAGGGTTATGAATCCTTAGTGGTGTTTGACGTTGGACCTGAGAAATTCAGGACGATTTGGATTCCGGATTTCATGTTTTCCGACTGCTGCTG TATAATGGAACTGGATGGGTGTGTAACCTTGGTGCATTCCGTCATCCAGAGAGAGCAGACACAGAAGCTATGTAAATTCCGTGATCGTAATAAGAATTAT AATGGAACATCAAGGGCAACAAGAGAAGACTGGAGTCAAGTTAGTATTCAATTGCCTAGCCATATACCGCCCTGGTATGCTATTTTGTATCATCCGATAC GTGGAAAAGACGAGATGATCTTGGAAACCTATAATGATGAGAATTTTTTGCATTACTCACGTTATGGACAGAGTGTGAAGCATGCCTGCTTTTATTCTTA CGATATGGTAGACAAGACGTTCAGCAAGTTCAAAATCCAAGGAATTCCCTCCATTGGATCCACTCGTTGTCAAATATTTGTAGAAGATCTTTTCTCTGGT TTGACAAAAAACCAGTCAAGAACCGTAAGTGAGACTCAGAAGAAGAAGTTGGGGTGCTGA
AA sequence Show only first row Show all	>Lus10015432 pacid=23160867 polypeptide=Lus10015432 locus=Lus10015432.g ID=Lus10015432.BGIv1.0 annot-version=v1.0 MAEEPLFRTHGVWKCQVDILKLMDQLGDCSVSLTDMTYGFTTSAPDNLPHRGSDLRSPGVVERTDRYVNLDSIPIRESIKLSWFGKVHLEKQACCEVLTV GVDSSWRVIDVVIPKRYFIEYSRTYVNGSIYWLIEDKGYESLVVFDVGPEKFRTIWIPDFMFSDCCCIMELDGCVTLVHSVIQREQTQKLCKFRDRNKNY NGTSRATREDWSQVSIQLPSHIPPWYAILYHPIRGKDEMILETYNDENFLHYSRYGQSVKHACFYSYDMVDKTFSKFKIQGIPSIGSTRCQIFVEDLFSG LTKNQSRTVSETQKKKLGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015432 [exp]	0	1

Compare expression of checked genes

Lus10015432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.