Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34910 631 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G16630 122 / 8e-29 DEA(D/H)-box RNA helicase family protein (.1) AT4G00660 114 / 1e-26 ATRH8 RNAhelicase-like 8 (.1.2) AT5G60990 109 / 3e-25 DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 109 / 5e-25 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G33730 108 / 2e-24 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G45810 107 / 2e-24 DEA(D/H)-box RNA helicase family protein (.1) AT3G09720 105 / 2e-23 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16280 101 / 2e-22 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT3G22330 100 / 5e-22 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042754 [exp] 124 / 4e-29 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10031182 [exp] 119 / 2e-28 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031761 [exp] 119 / 2e-28 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10006326 [exp] 118 / 1e-27 AT1G16280 673 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10029596 [exp] 115 / 2e-26 AT1G16280 674 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10015187 [exp] 114 / 4e-26 AT2G33730 1083 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017804 [exp] 112 / 9e-26 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10014783 [exp] 107 / 4e-24 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10032135 [exp] 107 / 8e-24 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021800 [exp] 778 / 0 AT4G34910 706 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G241300 [exp] 121 / 1e-28 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 116 / 1e-27 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 113 / 1e-26 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G194600 [exp] 112 / 1e-25 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G045800 [exp] 111 / 2e-25 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G068800 [exp] 109 / 2e-25 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G037200 [exp] 109 / 1e-24 AT2G33730 1058 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.019G065300 [exp] 106 / 5e-24 AT3G09720 652 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G157500 [exp] 106 / 5e-24 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10015433 pacid=23160860 polypeptide=Lus10015433 locus=Lus10015433.g ID=Lus10015433.BGIv1.0 annot-version=v1.0 ATGGGGAAAACTAAAGAGAAACGCGGGAACCGATTGATGGAAGTTAAAGAGGAACATGCAGAAGAAGAAGGAATATTGGCAGCACAGGCATCGCAGGCGG CTGAGCTCCAGGACGAGGTGAAAGACGAATTGAAAGAGGAGAACGATGGCGAGTACGGTTTGGGTGAAGCGGAGGAGGAAGAAAAGAGCTTTGAGGAGCT GGGGATAGACCCCAGGTTGATTCGAGCTCTTAGCAAGAAGGAAACTAGTATCGCCAAGCCAACGCCAATTCAGCGTGTCGCTATTCCACTCATACTAGAA GGAAAGGATGTGGTTGCACGAGCAAAAACTGGTTCTGGGAAGACACTAGCATACCTTCTTCCTTTGCTTCATAAGCTGTTTGCTAACTCGGGTTTGAAGA AAAAGAGTGCTCCTTCTGCCTTCATTCTCGTTTATAAGGAAGTATCTTCGCTCGTCGATTCATGTAAAGTGTTGTTGAAAGTTGTTCAGCTGAAAAGCAA CATGCCAGATTCTGATATGCGTGCAGCATTGTCTGGACCACCTGATATTCTGATCTCAACTCCAGCTTGTGTTGCAAAGTGCTTGTCCACTGGTTTACTG CAATCAACATCTGTGGGTGATTCTCTTGAAGTGCTTGTTCTTGATGAGGAACCAAACTGGTTCTTTGCTTCTCTCCTTGCTGCCCTTTCTTCTGGAAAAC CATTGATTTCAAGTTACTTTCAGGCAGATCTTTTATTAGATTTCGGGTTTGAGGAAGATCTAAAAGCTCTTACAACTCTTCTTCCAAGACGTTGTCAATG CCTTCTTATGTCTGCCACATCAAGCGACGATGTTGATAAACTGAAGAAGCTCATCCTACACAATCCATATATCCTAACATTGCCAGAGGTTGATGGTGTG AAGGATGAAGTTATCCCTAAAAATGTTCAACAATTTTGGATCTCATCCAGCAATCGAGACAAGCTAGTGCATGTTCTTGCCCTGTTGAAATTGGAACTTG TTCAGAAAAAAGTTCTTATATTTGCAAACTCTATTGATATGAGTTTCAGATTGAAACTGTTTTTGGAAAAGTTCGGAATCAAATCAGCTGTTTTAAATGC CGAGTTGCCACAAAATTCTCGTCTTCATATACTTGAGGGATTTAATGCGGGCCTTTTCGATTATCTGATTGCAAGTGATGTGAGTGAGACAAAAGACAAA GAATTAGCTGACAAAGGTACTACTACTGATACAAAAAAGTCTTGGAAGCACTCAAAGCCGAAGCCAAAGTTAGATGCAGAATTCGGGGTTGTGCGGGGAA TTGACTTCAAAAATGTCTTCACGGTAATAAATTATGACATGCCTGGTTCGGCAGTTGGGTATGTTCATCGGATTGGACGAACTGGAAGAGCATATAACAC TGGAGTCTCTGTTTCTCTGGTTTCTCCGGATGAGATGGAAATTTTTGAAGAAGTAAAAGCATTGTTAGGTGATGATGAGAGCTCTGACCTCATTTCTCCG TTCCCATTGCTGACTAAGAGTGCGGTTGAGTCCTTACGTTATAGAGCTGAGGACACAGCCCAGAGTGTTACTAAAGTTGCTGTCCGGGAAGCACGAGCAC AGGATTTGAGGAATGAAATGCTTAATTCGGAAAAGTTGAAGTCTCATTTTGAAGCTAATCCAAGGGACTTGGATCTACTGAAACATGACAAGGCCTTGAG CCAGAAGCCCCCTGCTCCTCATCTACGAAATGTGCCTGATTACTTGATTGATGCAACAACCAAGGAAGCGACCAAGATGGTGAAGCTTGCTAGAGCTGCA ATGGGGAAAAGCAATCCGTCTCGCCGTCAAGCATCTAAAAGAAAATTGAGAAAAGGAGGAGGTGGTGGAGATCCTTTGAAGACATTCTCGGCAGAGGGAC GGAAGAGAGCTGAAAAAGGCGGTATGAAAAGGGGAGGTCAAAGCAGCGATGGCAATCACAAACACAAAAAGAGAAAATCTGTGTGA
AA sequence Show only first row Show all	>Lus10015433 pacid=23160860 polypeptide=Lus10015433 locus=Lus10015433.g ID=Lus10015433.BGIv1.0 annot-version=v1.0 MGKTKEKRGNRLMEVKEEHAEEEGILAAQASQAAELQDEVKDELKEENDGEYGLGEAEEEEKSFEELGIDPRLIRALSKKETSIAKPTPIQRVAIPLILE GKDVVARAKTGSGKTLAYLLPLLHKLFANSGLKKKSAPSAFILVYKEVSSLVDSCKVLLKVVQLKSNMPDSDMRAALSGPPDILISTPACVAKCLSTGLL QSTSVGDSLEVLVLDEEPNWFFASLLAALSSGKPLISSYFQADLLLDFGFEEDLKALTTLLPRRCQCLLMSATSSDDVDKLKKLILHNPYILTLPEVDGV KDEVIPKNVQQFWISSSNRDKLVHVLALLKLELVQKKVLIFANSIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEGFNAGLFDYLIASDVSETKDK ELADKGTTTDTKKSWKHSKPKPKLDAEFGVVRGIDFKNVFTVINYDMPGSAVGYVHRIGRTGRAYNTGVSVSLVSPDEMEIFEEVKALLGDDESSDLISP FPLLTKSAVESLRYRAEDTAQSVTKVAVREARAQDLRNEMLNSEKLKSHFEANPRDLDLLKHDKALSQKPPAPHLRNVPDYLIDATTKEATKMVKLARAA MGKSNPSRRQASKRKLRKGGGGGDPLKTFSAEGRKRAEKGGMKRGGQSSDGNHKHKKRKSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34910			P-loop containing nucleoside t...		Lus10015433 [exp]	0	1
AT5G14520			pescadillo-related (.1)		Lus10000357 [exp]	2.2	0.9452
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10024128 [exp]	2.4	0.9513
AT1G55930			CBS domain-containing protein ...		Lus10003111 [exp]	3.0	0.9377
AT1G31660			unknown protein		Lus10032891 [exp]	4.2	0.9459
AT5G25757			RNA polymerase I-associated fa...		Lus10038622 [exp]	5.1	0.9506
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	6.6	0.9456
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10011474 [exp]	7.5	0.9428
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	9.5	0.9430
AT3G11964			RNA binding;RNA binding (.1)		Lus10016216 [exp]	10.2	0.9380
AT5G15550			Transducin/WD40 repeat-like su...		Lus10024727 [exp]	11.1	0.8967

Compare expression of checked genes

Lus10015433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.