Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34700 123 / 1e-34 Pollen Ole e 1 allergen and extensin family protein (.1) AT1G28290 119 / 8e-32 AGP31 arabinogalactan protein 31 (.1.2) AT2G33790 113 / 5e-30 ATAGP30 arabinogalactan protein 30 (.1) AT5G05500 71 / 6e-15 MOP10 Pollen Ole e 1 allergen and extensin family protein (.1) AT2G47540 49 / 4e-07 Pollen Ole e 1 allergen and extensin family protein (.1) AT4G18596 49 / 4e-07 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G45880 49 / 7e-07 Pollen Ole e 1 allergen and extensin family protein (.1) AT4G02270 47 / 1e-06 RHS13 root hair specific 13 (.1) AT3G09925 47 / 3e-06 Pollen Ole e 1 allergen and extensin family protein (.1) AT1G78040 40 / 0.0007 Pollen Ole e 1 allergen and extensin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014013 [exp] 252 / 3e-84 AT2G34700 137 / 2e-40 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10040948 [exp] 71 / 1e-14 AT5G05500 176 / 9e-57 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10009837 [exp] 70 / 2e-14 AT5G05500 171 / 1e-54 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10017440 [exp] 66 / 8e-13 AT5G05500 128 / 7e-38 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10007515 [exp] 52 / 4e-08 AT5G05500 127 / 3e-37 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10023887 [exp] 50 / 4e-07 AT3G09925 167 / 4e-53 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10041926 [exp] 47 / 5e-06 AT4G02270 100 / 5e-26 root hair specific 13 (.1) Lus10005539 [exp] 47 / 5e-06 AT4G02270 103 / 1e-27 root hair specific 13 (.1) Lus10013419 [exp] 43 / 0.0001 AT4G02270 118 / 3e-33 root hair specific 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G044700 [exp] 164 / 9e-50 AT2G34700 142 / 8e-43 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.011G053600 [exp] 164 / 1e-49 AT2G34700 139 / 5e-41 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.010G185400 [exp] 77 / 5e-17 AT5G05500 166 / 8e-53 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.008G072000 [exp] 66 / 4e-13 AT5G05500 152 / 5e-47 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.006G119100 [exp] 44 / 4e-05 AT3G09925 180 / 7e-58 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.002G093100 [exp] 43 / 6e-05 AT4G08685 199 / 3e-66 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.011G111300 [exp] 42 / 0.0001 AT1G29140 148 / 4e-46 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.002G201900 [exp] 40 / 0.0007 AT2G47540 160 / 1e-50 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [flax] [poplar] Transthyretin PF01190 [flax] [poplar] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Lus10015434 pacid=23160886 polypeptide=Lus10015434 locus=Lus10015434.g ID=Lus10015434.BGIv1.0 annot-version=v1.0 ATGGCGTCCGCCGCATCTCCGACGCTCTTCTCCCTCCTCCTCCTCCTCACAATCTCCACCCTCTCCGCCACCGCATTCACCGACAACGAGGAGTCCCTAA TCTCCTCCGTCGCCGTCACACCAGCCCACGCTCCTTCCCCCCACGGCCACCACCACCACTCGCCCACACCTTCCCCGCACTCCCCCAGCCACCACCACCA CCGCCGTCACCCAAACAAAACCCACGCGCCTACCCCTTCTCCTACTGCCTCTCCTCCGGCCAGCTCACCTCACCACGCGCCGTCTCCCCACGCCCCGCTC CCTCACACTCCAACTCCAGCTCCCGCTCCCCACCACGCAGCTCCGCCGGCTCACTCCCCTGTTTCACCTCCACACGCCCCCTCCCCTGCTCCCTCCGGCG GCCGCTACCCGTTCCAGAGGTTCCTCGTCGCTGTTCAGGGAGTCGTCTACTGCAAGCCGTGCAAGTACTCCGGCGTCGATACTCTCCTTGGCGCCACTCC CGTCCTCGGCGCGACGGTAAAGTTACAGTGCAACAATAGCCGAGTGCCTTTGGTGTTCAAGGCCACGACGGACAAAAACGGCTACTTCAAGGTCAAGGCT CCTAAGACCATCACCAACTATGGTGTCCACAAGTGCAAGGCCTCGCTCGTGTCGTCCCCCGACGCCAAGTGCTCGTTCAAGTCCACCCTCCACGGTGGGA CCACCGGTGGATCCCTCCGCGTCGACAAGAAGTTTGTCGAGTCGAACCAGACCTATGTGATGTTCACTGTCGGACCGTTCGCTTTCGAGCCCAAGTGCCA TTAA
AA sequence Show only first row Show all	>Lus10015434 pacid=23160886 polypeptide=Lus10015434 locus=Lus10015434.g ID=Lus10015434.BGIv1.0 annot-version=v1.0 MASAASPTLFSLLLLLTISTLSATAFTDNEESLISSVAVTPAHAPSPHGHHHHSPTPSPHSPSHHHHRRHPNKTHAPTPSPTASPPASSPHHAPSPHAPL PHTPTPAPAPHHAAPPAHSPVSPPHAPSPAPSGGRYPFQRFLVAVQGVVYCKPCKYSGVDTLLGATPVLGATVKLQCNNSRVPLVFKATTDKNGYFKVKA PKTITNYGVHKCKASLVSSPDAKCSFKSTLHGGTTGGSLRVDKKFVESNQTYVMFTVGPFAFEPKCH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10015434 [exp]	0	1
AT1G19990			unknown protein		Lus10033141 [exp]	1.4	0.9435
AT5G26749			C2H2 and C2HC zinc fingers sup...		Lus10001520 [exp]	2.8	0.9238
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	3.2	0.9414
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10034487 [exp]	4.2	0.9346
AT4G10630			Glutaredoxin family protein (....		Lus10033238 [exp]	4.5	0.9314
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10034199 [exp]	5.2	0.9235
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	5.5	0.9314
AT2G32840			proline-rich family protein (....		Lus10003918 [exp]	5.7	0.9097
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10015902 [exp]	6.0	0.9332
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Lus10031147 [exp]	6.5	0.9148

Compare expression of checked genes

Lus10015434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.