Plant FIBer expression Database

Lus10015435 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G20980 821 / 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
AT5G44320 779 / 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011171
[exp]
1038 / 0 AT4G20980 919 / 0.0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G044500
[exp]
833 / 0 AT4G20980 766 / 0.0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
Potri.011G053500
[exp]
815 / 0 AT4G20980 753 / 0.0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0236 PDDEXK PF05091 eIF-3_zeta Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
Representative CDS sequence
>Lus10015435 pacid=23160871 polypeptide=Lus10015435 locus=Lus10015435.g ID=Lus10015435.BGIv1.0 annot-version=v1.0
ATGGCTCCGAGCTTCGAATTGGGCGCCGTTCCCTTCAATCCGGAAGGATGGGGTCCTCCAGACGCCGCCGTAGCTACCAACTCCTCCACACTACCGCTGA
ACGTCCCGTTCGCGCCGTTCTCCCGCGCTGAGAAGCTCGGCCGAATCGCCGATTGGACTCGCAACAATCCGAACGCTGGCCGTCCCAACGCCGGTAAGAA
CGCATCGGAATCAGTCTTCGACTTCACCGCCGACGATACCTTCCTCGGCGGAGGAGGAGGAGCTGGAGGAGGAGATGAGGAGGCCTTCCGTCTCGTCGAC
GGAAAGCTCCCCACCAGGCCGAAGTTCGGGCCTAAGTGGAGGTTCAACCAGCACAGGCCGCAGCTCCCGCAGCGTCGCGATGAGGAAGTCGAGGCTAAGA
AGCGCGAAGCGGAGAAGGAGCGCGCCAGAAGGGACAGGCTGTGGAATCTCAACCGATCAAACCAGAATCAACAGCGTCGGGAGGCTGCAGCATTCAAATC
GTCAGTGGATATCCAGCCGGAGTGGAACATGCTGGATCAGATCCCGTTCTCGACTTTCTCCAAGCTGTCCTTCGCTGCTCCCGAGCCGGAAGATCTCCTC
ATGTGCGGAGGATTGGAGTTTTACGATCGTACCTACGACCGGATCACTCCTAAGAACGAACGCCGTCTGGAGAGGTTCAAGAACCGCAACTTCTTCAAAG
TCACAACCACCGATGACCCAGTGATCAGAAGGCTGGCGAATGAGGATAAGGCTACAGTCTTTGCCACCGATACTATCTTAGCCACTCTGATGTGTGCTCC
AAGGTCAGTCTATTCATGGGATATTGTGGTTCAGCGTGTTGGTAACAAGTTATTCTTTGATAAGAGGGATGGTTCCCAGCTCGATTTGCTTTCTGTCCAC
GAGACATCACAGGAGCCTTTGCCCGAGGCAAAGGACGATATCAACTCTGCTTACTCACTGAGTGTTGAAGCTGCTTACATTAACCAGAACTTCTCCCAGC
AAGTGTTGAATAGGATTGGCAATAAGGTCACATTCGATGAGCCTAACCCTTTTGCTAGTGAAGGAGAGGAAGTTGCTTCTGTTGGGTATAGGTATAGAAG
GTGGAAGCTTGATAACGATATGCATTTAGTCTCTAGATGTGAGGTGCAGGGTGTTTCTGAATCTAACAACCAGAGATCGTACTTGACTCTGAATGCATTG
AATGAATTTGATCCCAAGTATTCTGGTGTTGACTGGAGGCAGAAGCTCGAGACTCAGAGAGGAGCTGTTTTAGCTACCGAGTTGAAGAACAATGCGAACA
AGCTGGCAAAATGGACTGCTCAGGCATTGCTGGGAGGTGCGGATATGATGAAGCTAGGATATGTCTCCAGGGTTCATCCTAGGGATCATTTTAACCATGT
GATTCTTGCTGTTGTGGGATACAAGCCTAGAGAATTTGCTGCGCAGATTAATCTGAACACTTCCAACATGTGGGGTATTGTGAAGAGCATTGTGGATCTT
TGTATGAAGCTGAACGAGGGCAAGTATGTGTTGGTGAAGGATCCTTCGAAGCCTCAGGTGAGGATTTACGAGGTTCCAGCTGATGCCTTTGAGAATGACT
ATGTTGAGGAGCCGTTGCCTGAGGATGAGCAGGTGCAGCCCCCTGCTGAAGGTGAAGAGAATGGTGATGCTAATGGTGATTCTAAGAAGGATGTTGAAGA
GAAAGAAGCTGATGCTGCTCAGGCTTGA
AA sequence
>Lus10015435 pacid=23160871 polypeptide=Lus10015435 locus=Lus10015435.g ID=Lus10015435.BGIv1.0 annot-version=v1.0
MAPSFELGAVPFNPEGWGPPDAAVATNSSTLPLNVPFAPFSRAEKLGRIADWTRNNPNAGRPNAGKNASESVFDFTADDTFLGGGGGAGGGDEEAFRLVD
GKLPTRPKFGPKWRFNQHRPQLPQRRDEEVEAKKREAEKERARRDRLWNLNRSNQNQQRREAAAFKSSVDIQPEWNMLDQIPFSTFSKLSFAAPEPEDLL
MCGGLEFYDRTYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILATLMCAPRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSVH
ETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLNRIGNKVTFDEPNPFASEGEEVASVGYRYRRWKLDNDMHLVSRCEVQGVSESNNQRSYLTLNAL
NEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLGGADMMKLGYVSRVHPRDHFNHVILAVVGYKPREFAAQINLNTSNMWGIVKSIVDL
CMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPAEGEENGDANGDSKKDVEEKEADAAQA

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G20980 Eukaryotic translation initiat... Lus10015435
[exp]
0 1
AT4G20980 Eukaryotic translation initiat... Lus10011171
[exp]
2.8 0.9303
AT3G11250 Ribosomal protein L10 family p... Lus10014841
[exp]
3.0 0.9340
AT1G03100 Pentatricopeptide repeat (PPR)... Lus10007353
[exp]
3.2 0.9036
AT3G09630 Ribosomal protein L4/L1 family... Lus10014014
[exp]
3.9 0.9268
AT1G29900 VEN3, CARB VENOSA 3, carbamoyl phosphate ... Lus10021430
[exp]
4.0 0.9262
AT1G19520 NFD5 NUCLEAR FUSION DEFECTIVE 5, pe... Lus10030026
[exp]
4.1 0.8912
AT5G56680 SYNC1ARATH, SYN... EMBRYO DEFECTIVE 2755, Class I... Lus10032704
[exp]
4.2 0.9055
AT5G28740 Tetratricopeptide repeat (TPR)... Lus10041573
[exp]
4.9 0.9108
AT2G07560 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase... Lus10020149
[exp]
6.9 0.9072
AT3G11250 Ribosomal protein L10 family p... Lus10009887
[exp]
8.7 0.9134

Lus10015435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.