Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58950 559 / 0 Protein kinase superfamily protein (.1) AT3G46930 431 / 4e-148 Protein kinase superfamily protein (.1) AT1G62400 328 / 1e-109 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT2G24360 278 / 3e-89 Protein kinase superfamily protein (.1) AT4G31170 278 / 5e-89 Protein kinase superfamily protein (.1.2.3.4) AT5G01850 239 / 6e-75 Protein kinase superfamily protein (.1) AT4G38470 236 / 4e-71 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT5G40540 226 / 5e-70 Protein kinase superfamily protein (.1) AT2G17700 232 / 6e-70 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT3G27560 226 / 1e-69 ATN1 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011173 [exp] 884 / 0 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10025442 [exp] 601 / 0 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10015314 [exp] 369 / 1e-125 AT5G58950 318 / 1e-105 Protein kinase superfamily protein (.1) Lus10020018 [exp] 323 / 3e-107 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10015541 [exp] 324 / 9e-103 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10042122 [exp] 301 / 2e-98 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10020374 [exp] 287 / 2e-92 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10000237 [exp] 239 / 2e-76 AT1G62400 313 / 3e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10002374 [exp] 239 / 3e-76 AT1G62400 312 / 7e-107 high leaf temperature 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085300 [exp] 614 / 0 AT5G58950 604 / 0.0 Protein kinase superfamily protein (.1) Potri.005G082200 [exp] 603 / 0 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1) Potri.011G022800 [exp] 327 / 8e-109 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.012G080000 [exp] 324 / 7e-108 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 323 / 2e-107 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.015G075200 [exp] 316 / 9e-105 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 294 / 3e-95 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 293 / 9e-95 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.006G279900 [exp] 285 / 1e-91 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001900 [exp] 281 / 2e-90 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10015436 pacid=23160917 polypeptide=Lus10015436 locus=Lus10015436.g ID=Lus10015436.BGIv1.0 annot-version=v1.0 ATGGAGGAATCCACCACTTCCTGGCTACGCCGCGCGAAATTCTCCCACACCGTTTGCCACCGGATCGACACCTCCAAGCTCGCCTCCTACAGATTCGACA CGGCGTCGTACGGTTTGGTTAATGATGATTCGGCTAATGATTCGGTTCATCCGGTTTCATCTCAGATGAAGCAGAGATCCCTCTCCCCTGAACCGGAAAC GACGGTTCCAGATTCTTTCAAGGAGGCGAAGAAGGAGAAGAAGAGATTCTCAACTCCGAATCCCAGAGGGAAAGATTCTCCGGACGGTAGCAGCAGAGGG AAGAAATTGTTTCAGAAGCAGCAGTCGAAGAAGAGCGAAGAACGATCTGAATCGGAATCCGATCGGGAGCTGGATTCGTTGAAGGAGAGGAAGAAGGAAT CTTTTGGCGGGTGGTCGAAGAAGTTCTTTGACCATGGCGGTGGGAGAGTCAACGCGGTGGAAGCAAGCGATGAATTCAGCGTTGATATGTCTAAGCTGTT CTTGGGACTTAGGTTTGCTCATGGAGCTCACAGCAGGCTTTACCATGGCTTATACAACGACGAGCCTGTTGCTGTGAAGATCATAAGAGAACCCGAAGAT GATGAAACTGGCGTTTTGGGTGTACGGTTGAAGAGCCAGTTCGATCGCGAGGTCTTGCTTCTGTCTCGATTGGGACATCCCAATGTCATTCGGTTTGTGG CCGCTTGCAAGACGCCACCGGTATACTGCGTGATAACCGAGTACTTACCGGAAGGATCCCTGAGAGCCTACTTGCACAAGCTCGAAAACCGGTCTCTAGG AATGGAGAAGCTCATATCCTTCGCGCTGGACATTGCTCGAGGGATGGAGTACATCCACTCGCGGGGAGTGATCCACCGCGACCTTAAACCCGAGAACATC CTCCTCGACGAGGACTTCCGCCTCAAAATTGCCGATTTCGGTATAGCTTGCGAGGAAGCCTACTGCGACATGCTGATCGACGACCCCGGCACGTACCGGT GGATGGCTCCCGAGATGATAAAGAAGAAATCATACGGCAGGAAAGTCGATGTCTACGGATTCGGGCTGATGCTGTGGGAAATGGTCGCCGGGATGATTCC GTACGAGGAGATGAACCCGATCCAGGCTGCTTTTGCCGTTGTGAACAAGAATTTGAGGCCGGTGATCCCACCGGACTGTGCACCGGCCATGAAGGCCTTG ATCGAGCAATGCTGGTGTCTGCAGCCGGAGAAGCGGCCAGAGTTCTGGCAGATCGTAAAGGTGCTGGAGGAGTTCGAGCTGTCGTTTGCCCGCGACGGGA ACTTGAACATGGTCCATAACCCGAGCTGCAGCGATCACAAGAAGGGACCTCTCCACTGGATTCAGAAGAGAGGAGGGCCTGTGTATCCTTCTCCAAGTAA CCCCACGCCTAAACCTAAGTTCATGTGA
AA sequence Show only first row Show all	>Lus10015436 pacid=23160917 polypeptide=Lus10015436 locus=Lus10015436.g ID=Lus10015436.BGIv1.0 annot-version=v1.0 MEESTTSWLRRAKFSHTVCHRIDTSKLASYRFDTASYGLVNDDSANDSVHPVSSQMKQRSLSPEPETTVPDSFKEAKKEKKRFSTPNPRGKDSPDGSSRG KKLFQKQQSKKSEERSESESDRELDSLKERKKESFGGWSKKFFDHGGGRVNAVEASDEFSVDMSKLFLGLRFAHGAHSRLYHGLYNDEPVAVKIIREPED DETGVLGVRLKSQFDREVLLLSRLGHPNVIRFVAACKTPPVYCVITEYLPEGSLRAYLHKLENRSLGMEKLISFALDIARGMEYIHSRGVIHRDLKPENI LLDEDFRLKIADFGIACEEAYCDMLIDDPGTYRWMAPEMIKKKSYGRKVDVYGFGLMLWEMVAGMIPYEEMNPIQAAFAVVNKNLRPVIPPDCAPAMKAL IEQCWCLQPEKRPEFWQIVKVLEEFELSFARDGNLNMVHNPSCSDHKKGPLHWIQKRGGPVYPSPSNPTPKPKFM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58950			Protein kinase superfamily pro...		Lus10015436 [exp]	0	1
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10004485 [exp]	7.7	0.7841
AT1G02070			unknown protein		Lus10009267 [exp]	8.7	0.7969
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10014929 [exp]	10.4	0.7328
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10009999 [exp]	14.9	0.7469
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10033599 [exp]	15.2	0.7384
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10039037 [exp]	16.1	0.7542
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10034750 [exp]	16.7	0.7674
AT2G44300			Bifunctional inhibitor/lipid-t...		Lus10026220 [exp]	18.3	0.7252
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024747 [exp]	27.1	0.6726
AT2G42750			DNAJ heat shock N-terminal dom...		Lus10020749 [exp]	31.9	0.7208

Compare expression of checked genes

Lus10015436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.