Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32480 254 / 1e-83 Protein of unknown function (DUF506) (.1) AT2G20670 248 / 2e-81 Protein of unknown function (DUF506) (.1) AT3G07350 131 / 4e-36 Protein of unknown function (DUF506) (.1) AT4G14620 126 / 8e-34 Protein of unknown function (DUF506) (.1) AT3G22970 121 / 1e-32 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT2G38820 121 / 4e-32 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT3G25240 108 / 2e-27 Protein of unknown function (DUF506) (.1) AT2G39650 107 / 4e-27 Protein of unknown function (DUF506) (.1) AT1G77145 101 / 5e-25 Protein of unknown function (DUF506) (.1) AT1G77160 100 / 2e-24 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011174 [exp] 567 / 0 AT4G32480 268 / 2e-89 Protein of unknown function (DUF506) (.1) Lus10039838 [exp] 239 / 2e-77 AT4G32480 265 / 3e-88 Protein of unknown function (DUF506) (.1) Lus10017723 [exp] 236 / 2e-76 AT4G32480 271 / 2e-90 Protein of unknown function (DUF506) (.1) Lus10033683 [exp] 235 / 5e-76 AT4G32480 264 / 9e-88 Protein of unknown function (DUF506) (.1) Lus10041046 [exp] 153 / 3e-44 AT4G32480 172 / 6e-52 Protein of unknown function (DUF506) (.1) Lus10006177 [exp] 149 / 7e-43 AT4G32480 171 / 1e-51 Protein of unknown function (DUF506) (.1) Lus10014718 [exp] 125 / 6e-33 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10024840 [exp] 120 / 3e-31 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10003087 [exp] 120 / 6e-31 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G044300 [exp] 346 / 2e-119 AT4G32480 260 / 3e-86 Protein of unknown function (DUF506) (.1) Potri.011G053300 [exp] 327 / 4e-112 AT4G32480 253 / 3e-83 Protein of unknown function (DUF506) (.1) Potri.019G099600 [exp] 274 / 2e-91 AT4G32480 290 / 4e-98 Protein of unknown function (DUF506) (.1) Potri.013G129900 [exp] 271 / 4e-90 AT4G32480 307 / 6e-105 Protein of unknown function (DUF506) (.1) Potri.019G074400 [exp] 150 / 8e-44 AT4G32480 179 / 3e-55 Protein of unknown function (DUF506) (.1) Potri.013G100500 [exp] 138 / 1e-38 AT4G32480 172 / 4e-52 Protein of unknown function (DUF506) (.1) Potri.008G159800 [exp] 123 / 4e-32 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.004G184700 [exp] 119 / 2e-31 AT3G07350 298 / 3e-101 Protein of unknown function (DUF506) (.1) Potri.002G046300 [exp] 120 / 3e-31 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.008G056100 [exp] 119 / 3e-31 AT2G39650 293 / 3e-99 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10015437 pacid=23160952 polypeptide=Lus10015437 locus=Lus10015437.g ID=Lus10015437.BGIv1.0 annot-version=v1.0 ATGCCCACCGGAAGAATCAGAGGAGTTCCGATCAGGCAGCACAGCTTCATGTACAACACCAGCCTCGAAGCGGCTGCTCAGTCGACGTCCTCGTCGGATG AAGCGAGTCTTATCATATCCGACGTGGAGGACGCGTTGTTCGGGTTCCTCGACGGCAGCTACGAAGAAGGATCGTCCTCGCCAGAGATGATCAACTCCGA CGAGACGATGTGTTTGGGAGAAGAGGATGATGATGGAAATGGGGAGGAGCATGACAGAAGCTTCTGGGAAATTCAACACCAACTTTTACAGGCGACGTTA TGTAGGACGAGCTCTTTGGAGACGGGGGTCAGGAACGTTACTAAAGAAGCGGTGAAGGAGCTTCGGATGGCCACAACGATTTGCGGATGCGGCACAACGA TGGTCGGCGGCTGCCGGCGCTGCTTGATGGGTGAGATCTCCGGCAGGTTGAGAAACGCCGGGTACAATAGTGGCATTTGTCGGACAAAGTGGAGGAGCTC TCCCGATATTCCATCAGGCGAGCACACATTCATAGACGTGGTGGACAACTCGAGCAAGAAGAGAGGCGAGGTACGAATAATAATAGAGCTAAACTTCCGG CCGGAGTTCGAGATAGCCAAGGCCAGCGAGGATTACAACCGGCTAGTCCGCCGGCTGCCGGAGGTATTCGTCGGGAAAGTGGACCGGCTGAAGGACGTGA TCAAGATCGTTTGTCTAGCGGCGAAGAAGTGCATGAAGGAGAAGAAGATGCACATGGGTCCGTGGCGGAAGTGCCGGTACATGCAGGCAAAATGGCTTGG AAGTCCGGTGGAGAGAAGGTCGTCGCCGGCGCCGACCAGTTCAGGGGATTTGGCGACGGGGTATTTGGGACGGTACCCTAAGGCACGGTCGTCAATGCTG ACGGACGTGTTTAGCAATGTGCATTGTACCGCCGTCGGAGTGATGTAA
AA sequence Show only first row Show all	>Lus10015437 pacid=23160952 polypeptide=Lus10015437 locus=Lus10015437.g ID=Lus10015437.BGIv1.0 annot-version=v1.0 MPTGRIRGVPIRQHSFMYNTSLEAAAQSTSSSDEASLIISDVEDALFGFLDGSYEEGSSSPEMINSDETMCLGEEDDDGNGEEHDRSFWEIQHQLLQATL CRTSSLETGVRNVTKEAVKELRMATTICGCGTTMVGGCRRCLMGEISGRLRNAGYNSGICRTKWRSSPDIPSGEHTFIDVVDNSSKKRGEVRIIIELNFR PEFEIAKASEDYNRLVRRLPEVFVGKVDRLKDVIKIVCLAAKKCMKEKKMHMGPWRKCRYMQAKWLGSPVERRSSPAPTSSGDLATGYLGRYPKARSSML TDVFSNVHCTAVGVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32480			Protein of unknown function (D...		Lus10015437 [exp]	0	1
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10002246 [exp]	2.0	0.9792
AT4G32480			Protein of unknown function (D...		Lus10011174 [exp]	3.7	0.9788
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10027045 [exp]	4.5	0.9742
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10012536 [exp]	5.1	0.9604
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	6.9	0.9767
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	7.7	0.9732
AT5G20950			Glycosyl hydrolase family prot...		Lus10010656 [exp]	7.9	0.9584
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10019299 [exp]	8.1	0.9645
AT5G57655			xylose isomerase family protei...		Lus10006983 [exp]	8.1	0.9655
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10016858 [exp]	8.1	0.9739

Compare expression of checked genes

Lus10015437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.