Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28240 682 / 0 Protein of unknown function (DUF616) (.1) AT1G53040 486 / 2e-167 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT2G02910 263 / 8e-82 Protein of unknown function (DUF616) (.1) AT4G09630 252 / 6e-75 Protein of unknown function (DUF616) (.1) AT1G34550 250 / 5e-74 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT4G38500 241 / 7e-73 Protein of unknown function (DUF616) (.1) AT5G42660 217 / 3e-64 Protein of unknown function (DUF616) (.1) AT5G46220 147 / 2e-38 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011175 [exp] 925 / 0 AT1G28240 730 / 0.0 Protein of unknown function (DUF616) (.1) Lus10001446 [exp] 771 / 0 AT1G28240 706 / 0.0 Protein of unknown function (DUF616) (.1) Lus10036741 [exp] 275 / 9e-86 AT2G02910 545 / 0.0 Protein of unknown function (DUF616) (.1) Lus10037186 [exp] 273 / 2e-83 AT2G02910 546 / 0.0 Protein of unknown function (DUF616) (.1) Lus10025082 [exp] 258 / 2e-79 AT4G38500 764 / 0.0 Protein of unknown function (DUF616) (.1) Lus10024001 [exp] 252 / 6e-77 AT4G38500 771 / 0.0 Protein of unknown function (DUF616) (.1) Lus10009419 [exp] 244 / 2e-72 AT1G34550 753 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10028702 [exp] 244 / 4e-72 AT1G34550 750 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10016294 [exp] 209 / 4e-61 AT5G42660 603 / 0.0 Protein of unknown function (DUF616) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053000 [exp] 749 / 0 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G044100 [exp] 741 / 0 AT1G28240 779 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G119300 [exp] 494 / 1e-170 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.001G399800 [exp] 488 / 4e-168 AT1G53040 574 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.010G094000 [exp] 270 / 2e-84 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.009G138000 [exp] 258 / 3e-79 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 254 / 9e-78 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1) Potri.019G084100 [exp] 243 / 1e-71 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.013G113700 [exp] 243 / 1e-71 AT1G34550 708 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.002G149900 [exp] 207 / 2e-60 AT5G42660 633 / 0.0 Protein of unknown function (DUF616) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [flax] [poplar] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Lus10015438 pacid=23160856 polypeptide=Lus10015438 locus=Lus10015438.g ID=Lus10015438.BGIv1.0 annot-version=v1.0 ATGAACGGAAGTTCATTGGGGATCCGCTCGGGGAGTTATGGTTCATTGGAGAAACTGCAACAAAATCAACAGCAACAGCAACATCAGTTCCAGCATCAGC TACTACTGAACGGCGGTGGTGGTGGCGGTGGCGGTGGGAATCTGTTCTTGCCTGTTCAATCAGCGATCAGGACCAAGCCGGCGAAGATGTTTAAGGAGAA GGATAGATTCTTCCATTGGATCTGCAAGTTCGCCGGCCGGAAGAAGGTCGGGATGCTGCTTCTCTGCCTCATCTCCGCTGCGGTTTTCGTCTGGGTTTTG TATATAGGAAAAGGTGAAGATGCACAGGAAAGTGATCATGTTCCAAGGTTAGGCATACTAAGAAACATAACTTCTGTCAATATAAAGAATATTCCAGCTT TCATTCGTCCACCCCCTCCTCCAAGGTATTATACGGGCCACGTTCTTCCTCCTGGACATCCATGCAATAGCTTCACTTTGCCTCCTCCTCCTGCAGACAA GAAGAGAACTGGACCGCGGCCATGTCCTGTATGTTACCTGCCTGTGCAAGAAGCCATCAACTTGATGCCAAAGCTTCCGTCGTTCTCTCCCATCCTTAAG AATCTGACATACATCTATGAGAACCCGTTGACTAAAAATGGTGAATTTGGAGGCTCAGACTTTGGAGGATATCCTACCTTGGCTCAAAGAACTGACTCCT TTGATATTAGAGAGTCAATGAGTGTGCACTGCGGGTTTGTCAACGGTACAAGGGCTGGTCGGAATACGGGATTTGATATTGCAGAGGTCGATCTGGATGC GATGGACCAGTGCAGGGGTGTGGTTGTTTCCTCTGCAATATTCGCGGCTTTTGATAATATACAACAGCCAAGCAACATCAGTGAGTATTCCAAGAGAACT GTATGCTTCTTTATGTTTGTGGATGAAGAAACAGAAACCTACCTCCATAATAGTGGGCAGTTGAATGATAGCAGAAAGGTTGGTGTATGGAGAATCGTTA GGATCCATAACCCTCCTTACACTGATGGGAGACGCACCGGAAAGATTCCAAAGCTGCTACCTCAGAGGTTGTTTCCAAATGCTCGCTACTCTATATGGAT TGATGGGAAGCTTGAGTTGGTTGTTGATCCCTATCAAATTCTTGAAAGGTTTTTGTGGAGGGCAAATGCTACATTTGCAATCTCCAGACACTACAAACGC TTTGATGTCTTCGTTGAAGCTCAGGCAAACAAAGCCGCTGGGAAGTATGATAATGCTTCCATTGACTTCCAGATTGATTTCTACAAGAATGAAGGCCTAA CCCCGTTCACTCCGGACAAGGAGCATGCACCTATAAGCAACCTCTTCACTTGTCTTTGGTTCAACGAAGTTGACCGCTTTACTTCAAGGGACCAAATCAG CTTCTCCACCGTCCGGGATAAGATCCGTGCCAAAACGAATTGGACTGTGAACATGTTCTTGGACTGCGAGAGAAGGAACTTCGTGGTTCAGAAATACCAC AGGGAAGTGCTTCTGCGCATGTCTCGCCACCCACCTCCCTATGTTCTTCCACCTGCATTGCCAGAGAGTCAACCACCACCTCCACCGATAATCGAACCTC CACCTCAGATCAGGAGGGGAGGAGTGAGGCGGGCCAGAAGGGCCGGAGGAGGTGCGAGGCGCCACCGGAAAGTGGTCGCTGGTGGCCGGGATGCTGAACA ACCCATGTGA
AA sequence Show only first row Show all	>Lus10015438 pacid=23160856 polypeptide=Lus10015438 locus=Lus10015438.g ID=Lus10015438.BGIv1.0 annot-version=v1.0 MNGSSLGIRSGSYGSLEKLQQNQQQQQHQFQHQLLLNGGGGGGGGGNLFLPVQSAIRTKPAKMFKEKDRFFHWICKFAGRKKVGMLLLCLISAAVFVWVL YIGKGEDAQESDHVPRLGILRNITSVNIKNIPAFIRPPPPPRYYTGHVLPPGHPCNSFTLPPPPADKKRTGPRPCPVCYLPVQEAINLMPKLPSFSPILK NLTYIYENPLTKNGEFGGSDFGGYPTLAQRTDSFDIRESMSVHCGFVNGTRAGRNTGFDIAEVDLDAMDQCRGVVVSSAIFAAFDNIQQPSNISEYSKRT VCFFMFVDEETETYLHNSGQLNDSRKVGVWRIVRIHNPPYTDGRRTGKIPKLLPQRLFPNARYSIWIDGKLELVVDPYQILERFLWRANATFAISRHYKR FDVFVEAQANKAAGKYDNASIDFQIDFYKNEGLTPFTPDKEHAPISNLFTCLWFNEVDRFTSRDQISFSTVRDKIRAKTNWTVNMFLDCERRNFVVQKYH REVLLRMSRHPPPYVLPPALPESQPPPPPIIEPPPQIRRGGVRRARRAGGGARRHRKVVAGGRDAEQPM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28240			Protein of unknown function (D...		Lus10015438 [exp]	0	1
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004550 [exp]	1.4	0.8844
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10031106 [exp]	2.8	0.8514
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10003172 [exp]	3.3	0.8481
AT1G27210			ARM repeat superfamily protein...		Lus10010730 [exp]	3.9	0.8661
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10021637 [exp]	6.0	0.8813
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10014894 [exp]	6.2	0.8393
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10039569 [exp]	10.0	0.8481
AT5G27490			Integral membrane Yip1 family ...		Lus10015189 [exp]	14.5	0.8433
AT1G04200			unknown protein		Lus10039377 [exp]	15.7	0.8242
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Lus10017079 [exp]	15.7	0.8436

Compare expression of checked genes

Lus10015438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.