Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15358 189 / 1e-62 unknown protein AT1G53035 182 / 8e-60 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011176 [exp] 281 / 7e-99 AT3G15358 191 / 1e-63 unknown protein Lus10039835 [exp] 177 / 9e-58 AT1G53035 172 / 7e-56 unknown protein Lus10018600 [exp] 176 / 3e-57 AT1G53035 166 / 1e-53 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052900 [exp] 225 / 8e-77 AT3G15358 159 / 7e-51 unknown protein Potri.004G044000 [exp] 224 / 8e-77 AT1G53035 182 / 4e-60 unknown protein Potri.013G130100 [exp] 200 / 4e-67 AT1G53035 169 / 9e-55 unknown protein Potri.001G399900 [exp] 192 / 4e-64 AT1G53035 182 / 6e-60 unknown protein Potri.011G119200 [exp] 186 / 1e-61 AT1G53035 172 / 4e-56 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015439 pacid=23160863 polypeptide=Lus10015439 locus=Lus10015439.g ID=Lus10015439.BGIv1.0 annot-version=v1.0 ATGCCGCCGTCGCAGTCTCAGTCGGCGTCGTCAGCCGCGTTCAGGCTGATCTGCGTGCTTCACTCGCTAATCGCGATCACGAGCGGGACGCTGATGATGT TCAGCATGAAGGAAGTCTACGCTCTAACACACGGGATTGACACGGCGGCGAAGCTGCTCGGATCGACGCCGGAGGACCAGATCTTGATCCGGACATCGGA TTCGTTCGCCGGACTGCTCCTGTTCGCGATCGGGAGCTTGCTGTTCATGGTTTCGTTCGTGAAAGATCGGGAGTTCCACTCGTTCTTCGCCAAGGGGTGT ACGTTGCTCCACTTGTTTATGGCGGTTTGGAGGGTTTACTTCGAGACTAGAGTTGAGGCACTGGCCTGGGATTGCCTGAGGCAGACAGTTGGCGACTTCT TATTGGCTACTTCCTGGGTTTTCTTCCTCGTCTATTCGTGGAGAGAAAAGTATGATTAA
AA sequence Show only first row Show all	>Lus10015439 pacid=23160863 polypeptide=Lus10015439 locus=Lus10015439.g ID=Lus10015439.BGIv1.0 annot-version=v1.0 MPPSQSQSASSAAFRLICVLHSLIAITSGTLMMFSMKEVYALTHGIDTAAKLLGSTPEDQILIRTSDSFAGLLLFAIGSLLFMVSFVKDREFHSFFAKGC TLLHLFMAVWRVYFETRVEALAWDCLRQTVGDFLLATSWVFFLVYSWREKYD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15358			unknown protein		Lus10015439 [exp]	0	1
AT3G15358			unknown protein		Lus10011176 [exp]	1.4	0.8895
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10010442 [exp]	6.0	0.8522
AT4G35750			SEC14 cytosolic factor family ...		Lus10005640 [exp]	8.7	0.8222
AT4G28240			Wound-responsive family protei...		Lus10031617 [exp]	9.6	0.8625
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	9.9	0.8666
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	15.2	0.8506
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10013401 [exp]	19.7	0.8630
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10020344 [exp]	19.8	0.8197
AT1G19310			RING/U-box superfamily protein...		Lus10016303 [exp]	19.9	0.8116
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10005518 [exp]	21.2	0.8472

Compare expression of checked genes

Lus10015439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.