Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22620 179 / 7e-53 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) AT3G50520 61 / 8e-11 Phosphoglycerate mutase family protein (.1) AT5G04120 56 / 4e-09 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020553 [exp] 157 / 2e-44 AT5G22620 593 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Lus10009404 [exp] 72 / 7e-14 AT5G22620 346 / 2e-116 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Lus10009403 [exp] 67 / 2e-12 AT2G44860 120 / 2e-33 Ribosomal protein L24e family protein (.1.2) Lus10014360 [exp] 52 / 1e-07 AT3G50520 313 / 5e-108 Phosphoglycerate mutase family protein (.1) Lus10026068 [exp] 51 / 4e-07 AT3G50520 312 / 1e-107 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052200 [exp] 416 / 7e-148 AT5G22620 184 / 4e-55 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Potri.004G187700 [exp] 165 / 4e-47 AT5G22620 634 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Potri.007G040700 [exp] 54 / 5e-08 AT3G50520 327 / 2e-113 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10015442 pacid=23160865 polypeptide=Lus10015442 locus=Lus10015442.g ID=Lus10015442.BGIv1.0 annot-version=v1.0 ATGGTATCAGCCGTTCTAGGCTTTCAATCACCTCTTTCTTCTAGCCTCACCTCCATATCCAATCCAAGAACAGCAGCAGCTGTTCACAAGCGATTCGCCA AGGTTCCAATTAGCTGCTCCAGCTCTAATCCGGATGTCCCGTTAGTCGCTGAGAAGTTGCAGCAGAACAGCAACGACGCTAGGGTTACAGGAAGCGCGTA TGATTTCTCGAGAGCGACGAGCTCTCTAACGGGGAGGCCTCTGTCGTCTCCGAAGAAGGTTACAATTGTTAGGCACGGGCTTAGCTCGTGGAATCACGAG AGTCGAGTTCAGGGAAGTTCGAATTTGTCTGTATTAACGGAGACTGGAGTGAAGCAAGCGGAGATGTGCAGGGCGGCATTGTCACAGATGCAATTTGATC AGTGCTTTTCAAGTCCAATTTCTCGTGCCAAGTCTTTTGCTGAGGTGATATGGCAAGGGAGGGAAGAGCCGATTGTGTTCCTCGATTCGTTGAAGGAGGC TCATCTTTTCCATCTTGAAGGCATGAAAAATGTGGATGCTAAGGCGAGATATCCAGAGTACACTGTATGGAGAGAAGATCCTTCCAACTTCAACGTGAAT GGCGTCTACCCGATACAAAACCTGTGGCTTACTGCTAGAGATGCGTGGAAGGAAATCTTGTTGTCACCTGGAGAAAGCTTCCTGGTTGTCACACACAAGT CGATCTTACGGGCACTTGTATGCACAGCTCTAGGCCTCGGTCCCGAAAGGTTCAGGGCGGTCGATGTTAACAATGGCGGAATATCAGTGTTTGACATCAA CATCAGTGGTGAAGTAATGGTTCAGTCCATGAACATGACAGCTCACATGTATACTGATCATGTCTATCCTTAA
AA sequence Show only first row Show all	>Lus10015442 pacid=23160865 polypeptide=Lus10015442 locus=Lus10015442.g ID=Lus10015442.BGIv1.0 annot-version=v1.0 MVSAVLGFQSPLSSSLTSISNPRTAAAVHKRFAKVPISCSSSNPDVPLVAEKLQQNSNDARVTGSAYDFSRATSSLTGRPLSSPKKVTIVRHGLSSWNHE SRVQGSSNLSVLTETGVKQAEMCRAALSQMQFDQCFSSPISRAKSFAEVIWQGREEPIVFLDSLKEAHLFHLEGMKNVDAKARYPEYTVWREDPSNFNVN GVYPIQNLWLTARDAWKEILLSPGESFLVVTHKSILRALVCTALGLGPERFRAVDVNNGGISVFDINISGEVMVQSMNMTAHMYTDHVYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10015442 [exp]	0	1
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Lus10038147 [exp]	1.0	0.9318
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039433 [exp]	4.0	0.8696
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10025847 [exp]	6.5	0.9197
AT2G04700			ferredoxin thioredoxin reducta...		Lus10039449 [exp]	6.5	0.9273
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10040169 [exp]	7.1	0.9068
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10011972 [exp]	11.8	0.8918
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Lus10032727 [exp]	12.3	0.8538
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10001560 [exp]	14.0	0.8815
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10025959 [exp]	15.5	0.8632
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	16.5	0.9116

Compare expression of checked genes

Lus10015442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.