Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21710 2249 / 0 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) AT5G45140 690 / 0 NRPC2 nuclear RNA polymerase C2 (.1) AT3G23780 626 / 0 NRPE2, DMS2, DRD2, NRPD2a DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) AT3G18090 598 / 0 NRPD2B nuclear RNA polymerase D2B (.1) AT1G29940 304 / 8e-86 NRPA2 nuclear RNA polymerase A2 (.1) ATCG00190 142 / 4e-34 ATCG00190.1, RPOB RNA polymerase subunit beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011182 [exp] 2368 / 0 AT4G21710 2293 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10028778 [exp] 670 / 0 AT5G45140 1711 / 0.0 nuclear RNA polymerase C2 (.1) Lus10017504 [exp] 557 / 2e-179 AT5G45140 1652 / 0.0 nuclear RNA polymerase C2 (.1) Lus10027166 [exp] 373 / 2e-110 AT3G23780 1435 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10039677 [exp] 345 / 3e-100 AT3G23780 696 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10026157 [exp] 317 / 2e-90 AT1G29940 1574 / 0.0 nuclear RNA polymerase A2 (.1) Lus10011322 [exp] 233 / 1e-65 AT5G45140 468 / 2e-153 nuclear RNA polymerase C2 (.1) Lus10012207 [exp] 88 / 1e-20 AT5G45140 150 / 6e-44 nuclear RNA polymerase C2 (.1) Lus10039408 [exp] 84 / 4e-17 AT5G45140 129 / 9e-34 nuclear RNA polymerase C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G043200 [exp] 2284 / 0 AT4G21710 2271 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Potri.015G003000 [exp] 699 / 0 AT5G45140 1826 / 0.0 nuclear RNA polymerase C2 (.1) Potri.018G019100 [exp] 627 / 0 AT3G23780 1694 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.001G030750 [exp] 328 / 2e-94 AT1G29940 1674 / 0.0 nuclear RNA polymerase A2 (.1) Potri.006G263900 [exp] 136 / 1e-35 AT3G23780 253 / 5e-77 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.013G142232 [exp] 140 / 2e-33 ATCG00190 2015 / 0.0 RNA polymerase subunit beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04567 [flax] [poplar] RNA_pol_Rpb2_5 RNA polymerase Rpb2, domain 5 PF04566 [flax] [poplar] RNA_pol_Rpb2_4 RNA polymerase Rpb2, domain 4 PF04561 [flax] [poplar] RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2 PF04565 [flax] [poplar] RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3 PF04563 [flax] [poplar] RNA_pol_Rpb2_1 RNA polymerase beta subunit PF04560 [flax] [poplar] RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7
Representative CDS sequence Show only first row Show all	>Lus10015446 pacid=23160920 polypeptide=Lus10015446 locus=Lus10015446.g ID=Lus10015446.BGIv1.0 annot-version=v1.0 ATGATGATGGATGAGGATCAGGCGTACGACCCGGAGATGATGGAGGATGTGGAAGGAGAGGAGGAAATCAATCAGGAGGACGCTTGGGCGGTAATCTCCG CTTACTTCGAAGAGAAAGGTCTTGTGCGGCAGCAGCTTGATTCGTTCGACGAGTTCATCCAGAACACGATGCAGGAGATTGTGGACGAGTCGGCCGACAT CGAGATTCGGCCGGAGAGCCAGCATAACCCCGGGCATCAGTCCGATTCCCTTGAGACCATTTACAAAATCAGCTTCGGTCAAATATATTTGAGTAAGCCT ATGATGACAGAGTCTGATGGAGAGACAGCAACATTGTTCCCTAAAGCCGCCAGGTTGAGGAACTTGACATATTCAGCTCCATTGTATGTGGACGTCTCAA AAAGGGTGATAAAGAAGGGCCATGATGGTGAAGAAGTAACTGAATCTCAAGATTTCACCAAAGTTTTTATCGGGAAGGTGCCAATCATGCTCCGGTCAAG TTATTGCACTTTGTACCAGAATTCTGAGACAGATTTGACAGAGCTTGGAGAGTGTCCCTTTGATCAGGGTGGGTATTTCATCATCAATGGGAGTGAGAAG GTGCTCATTGCACAGGAGAAGATGAGCACAAATCATGTCTATGTTTTCAAGAAACGACAGCCGAACAAGTATTCCCATGTGGCTGAAGTTCGATCCATGG CAGAGTCTCAGAACAGGCCTCCAAGTACCATGTTCGTTCGGATGCTTTCTCGTGCTGGTGCTAAAGGGGGCTCAACAGGACAATACATTAAGGCTACTCT ACCATACATCAGGACTGAAATTCCGATCATTATTGTGTTTCGAGCTCTTGGGTTTGTTGCTGACAAAGATATATTAGAGCACATTTGTTATGATTTCGCC GATACTCAAATGATGGAACTGTTACGTCCCTCGTTGGAAGAGGCATTCGTGATTCAAAATCAACAGGTTGCTCTCGACTATATCGGGAAACGTGGGGCAA CTGTTGGTGTTACGAGGGAAAAAAGGATCAAGTATGCTAGAGATATTCTACAAAAGGAAATGCTCCCTCATGTTGGCGTTGGAGAATTTTGCGAGACCAA AAAAGCTTACTATTTTGGGTATATCATTCACCGGCTTCTACTTTGTGCACTTGGACGAAGGCCCGAGGATGATAGGGATCATTATGGAAACAAGAGGCTT GATCTTGCTGGTCCTTTGCTCGGTGGCCTTTTCAGAATGTTATTCAGAAAGTTGACTAGGGATGTCAGGTCATATGTGCAGAAGTGTGTTGATAACGGTA AAGATGTTAATCTGCAATTCGCCATCAAAGCAAAAACCATAACCAGTGGTCTCAAATACTCTCTTGCCACTGGAAATTGGGGGCAAGCAAATGCTGCTGG CACTAGAGCTGGAGTGTCCCAAGTGTTAAATAGGTTGACCTTTGCCTCTACTCTATCACATCTCCGGCGGCTGAACTCCCCAATTGGGCGTGAAGGAAAA TTGGCAAAACCAAGGCAGCTTCATAACTCCCAGTGGGGAATGATGTGTCCAGCCGAGACACCCGAAGGACAGGCCTGTGGACTAGTGAAGAATCTTGCTT TGATGGTATACATTACTGTCGGATCGGCAGCCTACCCCATATTGGAGTTTTTAGAGGAGTGGGGGACTGAAAACTTCGAGGAAATCTCTCCCGCTGTAAT ACCTCAAGCTACCAAGATTTTCGTTAATGGTTGCTGGGTTGGTATCCATCGAGACCCTGATATGTTGGTAAAGACATTGCGACGGCTGCGGCGGCGGGTT GATGTTAACACTGAAGTCGGAGTTGTGAGAGACATTCATTTAAAGGAGTTGCGTATATACACAGATTATGGCCGTTGCAGTCGTCCTTTATTTATTGTTG AGAGCCAAAGGCTTCTTATAAGAAAGAAGGATATCACCGCATTGCAGCAGAGGGAATCAGCTGAAGAGGGAGGCTGGCACGATCTGGTGGCCAAAGGGTT TATCGAGTATATCGATACCGAGGAAGAGGAGACAACTATGATATCAATGACCATACATGATCTTGTACAAGCCAGAAATAACTTGAAGGACGCTTATTGT ACCACTTACACTCACTGTGAGATTCATCCGTCGTTGATTCTAGGTGTTTGTGCCTCGATCATTCCGTTTCCTGATCATAACCAGTCTCCACGTAACACTT ACCAATCTGCTATGGGGAAGCAAGCCATGGGAATTTACGTCACTAACTATCAATTCCGCATGGACACGTTGGCGTATGTTCTGTACTACCCGCAAAAACC ACTCGTTACAACAAGAGCTATGGAGCATCTCCACTTCCGGCAGCTTCCGGCTGGCATCAATGCCATTGTCGCCATTTCTTGCTATTCTGGTTACAATCAA GAAGATTCTGTCATCATGAATCAATCCTCGATTGATCGTGGATTCTTCAGATCACTTTTCTTCCGCTCTTACAGGGACGAGGAGAAAAAGATGGGCACGC TCGTTAAAGAAGATTTCGGCCGTCCAGACAGAGCTAACACCATGGGAATGCGACATGGCTCGTATGAGAAATTAGATGATGATGGTCTTGCGCCACCTGG TACGAGATGTGCTGGTGAGGATGTTATCATCGGAAAGACCACCCCAATCTCGCAGGAAGACGCCCAGGGTCAAAATGCACGATACACGAGGCGTGACCAC AGCATAAGCTTACGTCACAGTGAAACTGGGATGGTTGATCAAGTTTTGCTGACGACGAATGCTGATGGGTTGAGGTTTGTCAAAGTGAGGGTGAGATCCG TTCGGATTCCTCAGATCGGTGACAAGTTCAGTAGTAGACACGGTCAGAAGGGAACCGTTGGTATGACTTATACTCAAGAGGACATGCCTTGGACTATTGA GGGCGTGACGCCTGATATTATCGTGAATCCGCATGCTATTCCCTCTCGTATGACGATCGGTCAGCTCATTGAGTGTATCATGGGGAAAGTTGCTGCTCAC ATGGGCAAGGAAGGCGACGCTACTCCGTTCACAGATGTTACTGTGGACAATATAAGCAAAGCCTTGCACAAGTGCGGGTATCAAATGCGTGGTTTCGAGA CCATGTACAACGGCCACACAGGCCGACGTCTCACAGCCATGATCTTCCTCGGCCCTACTTACTACCAGAGGCTGAAGCATATGGTGGACGACAAGATCCA CTCTCGAGGAAGGGGACCTGTTCAGATCCTCACAAGGCAGCCCGCCGAAGGACGGTCCCGTGACGGCGGTCTCCGTTTCGGCGAGATGGAGCGCGACTGC ATGATTGCGCACGGCGCTGCCAACTTCCTCAAGGAGCGGCTGTTCGACCAGAGCGACGCCTACAGGGTTCATGTGTGCGAGCCGTGCGGTCTGATCGCCA TTGCAAATCTGAAGAAGAGTTCCTTTGAATGCCGGGGTTGCAAGAACAAGACCGAGATTGTCCAGGTTCAAATACCTTACGCGTGCAAGCTCCTCTTCCA AGAGCTGATGTCCATGGCCATAGCTCCGAGAATGCTCACCAAGGATGTACTTGTACTTCAGAAGAAAGGTCAAAAGAGAAAATGA
AA sequence Show only first row Show all	>Lus10015446 pacid=23160920 polypeptide=Lus10015446 locus=Lus10015446.g ID=Lus10015446.BGIv1.0 annot-version=v1.0 MMMDEDQAYDPEMMEDVEGEEEINQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDSLETIYKISFGQIYLSKP MMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTESQDFTKVFIGKVPIMLRSSYCTLYQNSETDLTELGECPFDQGGYFIINGSEK VLIAQEKMSTNHVYVFKKRQPNKYSHVAEVRSMAESQNRPPSTMFVRMLSRAGAKGGSTGQYIKATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFA DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYARDILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRL DLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGK LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRV DVNTEVGVVRDIHLKELRIYTDYGRCSRPLFIVESQRLLIRKKDITALQQRESAEEGGWHDLVAKGFIEYIDTEEEETTMISMTIHDLVQARNNLKDAYC TTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQ EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYEKLDDDGLAPPGTRCAGEDVIIGKTTPISQEDAQGQNARYTRRDH SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAH MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC MIAHGAANFLKERLFDQSDAYRVHVCEPCGLIAIANLKKSSFECRGCKNKTEIVQVQIPYACKLLFQELMSMAIAPRMLTKDVLVLQKKGQKRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10015446 [exp]	0	1
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	1.4	0.9538
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	2.0	0.9513
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	2.4	0.9374
AT1G21610			wound-responsive family protei...		Lus10028676 [exp]	3.6	0.8966
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10042094 [exp]	4.2	0.9204
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	5.7	0.9257
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Lus10000967 [exp]	5.9	0.9136
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10011054 [exp]	6.3	0.9209
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025973 [exp]	6.8	0.8826
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	7.5	0.9127

Compare expression of checked genes

Lus10015446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.