Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49990 191 / 4e-57 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010625 [exp] 418 / 2e-145 AT3G49990 348 / 1e-114 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G234800 [exp] 227 / 1e-70 AT3G49990 299 / 3e-95 unknown protein Potri.002G028100 [exp] 92 / 2e-22 AT3G49990 84 / 6e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015447 pacid=23173636 polypeptide=Lus10015447 locus=Lus10015447.g ID=Lus10015447.BGIv1.0 annot-version=v1.0 ATGGGGAGGAAGAAGAAATTCATCGATAAGAAGAAAGCGGCGACGTTCCAGTTAATGGCGAGGGACTCTTCGGATCCCCTTTTTGACGGGACACCTGGGA GTGAGAAAGTTTTCATTGGTGTCGACGATAATCCTTATGTCCTCGATGCGGAAGGCGGGCATGGCGAAGATGAGGCGAATTTCATATTCGCCGATGCACC TGAGGATGTTGACGACGACTCTGGAGAGGTTGAAGATGCAGTTTTGGGGTTTTCGATGAGATCCCGCGCCGAATTTGGTGAAGCCTGTTATACTAGGTCC GCGTTGCCGGATAATGTGAGGAAAGAGATTATTGAGCTAGGGTTTCCTGATGACGGCTACAATTATCTGCATCACCTTCGTGAGATTAAGAACACTGGTG GAGGCTCCATGTATTATGAGAACCCAAAGGCTCAACTCGATCAGATTCCTGGCGATGTCAAGGCCTATGATGCTTCCCGAGTGCCAATGCCTGAAGTGAA AGAGGAAGATAAAGATATTCAATCTGTTTACACCATAGCTGCAAAGACTATTGGTGCTAGGATCCAGAAAGTGGTTGATCCTGAAGTGGCTGCTTTACTC GACTATGACAGTGATATGTCTCGATTCGGTTCTGATGTGGAGGATTTGGAGGAGGACTTTGTGGTTCAGGCTAATCTTGCCGAGGAAAGGGTCGATGGTT TGGATGATATTGTCACAAAAGTGAGTCTTAAGCCTGACCAGGTAATTAAGAAGTCATTTCCAACATGCACGGCAAATATTAGCCCATTTGAGAATTTAAA ATTTTCATGTCAAAATGGATCATTTCCATAG
AA sequence Show only first row Show all	>Lus10015447 pacid=23173636 polypeptide=Lus10015447 locus=Lus10015447.g ID=Lus10015447.BGIv1.0 annot-version=v1.0 MGRKKKFIDKKKAATFQLMARDSSDPLFDGTPGSEKVFIGVDDNPYVLDAEGGHGEDEANFIFADAPEDVDDDSGEVEDAVLGFSMRSRAEFGEACYTRS ALPDNVRKEIIELGFPDDGYNYLHHLREIKNTGGGSMYYENPKAQLDQIPGDVKAYDASRVPMPEVKEEDKDIQSVYTIAAKTIGARIQKVVDPEVAALL DYDSDMSRFGSDVEDLEEDFVVQANLAEERVDGLDDIVTKVSLKPDQVIKKSFPTCTANISPFENLKFSCQNGSFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49990			unknown protein		Lus10015447 [exp]	0	1
					Lus10019215 [exp]	1.4	0.8855
AT1G79190			ARM repeat superfamily protein...		Lus10001243 [exp]	2.4	0.8771
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	3.9	0.8625
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017819 [exp]	5.7	0.8304
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003747 [exp]	6.3	0.8380
AT5G23200			unknown protein		Lus10010192 [exp]	6.6	0.8233
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004002 [exp]	7.3	0.8170
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10040013 [exp]	7.3	0.8093
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030865 [exp]	7.9	0.8246
AT5G07940			unknown protein		Lus10034693 [exp]	8.2	0.8180

Compare expression of checked genes

Lus10015447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.