Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66310 536 / 0 ATP binding microtubule motor family protein (.1) AT3G51150 536 / 0 ATP binding microtubule motor family protein (.1.2) AT4G24170 520 / 1e-175 ATP binding microtubule motor family protein (.1) AT2G21300 511 / 3e-174 ATP binding microtubule motor family protein (.1.2) AT4G38950 503 / 3e-171 ATP binding microtubule motor family protein (.1.2) AT1G18370 431 / 1e-141 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT3G43210 407 / 5e-133 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT5G42490 375 / 4e-119 ATP binding microtubule motor family protein (.1) AT3G10180 306 / 2e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 278 / 1e-84 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010624 [exp] 887 / 0 AT3G51150 577 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10033920 [exp] 782 / 0 AT3G51150 578 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10025969 [exp] 536 / 1e-180 AT3G51150 694 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10014268 [exp] 531 / 1e-178 AT5G66310 667 / 0.0 ATP binding microtubule motor family protein (.1) Lus10031086 [exp] 520 / 5e-177 AT2G21300 1026 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10035471 [exp] 519 / 2e-176 AT2G21300 1011 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10005181 [exp] 431 / 3e-142 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Lus10032452 [exp] 429 / 6e-141 AT1G18370 1452 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Lus10042952 [exp] 426 / 5e-136 AT1G18370 1206 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027600 [exp] 595 / 0 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.007G014800 [exp] 545 / 0 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.005G116900 [exp] 541 / 0 AT3G51150 668 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.009G124500 [exp] 539 / 0 AT2G21300 752 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.004G162800 [exp] 534 / 0 AT2G21300 1031 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G136600 [exp] 437 / 2e-144 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.012G054400 [exp] 437 / 2e-144 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.015G044600 [exp] 432 / 2e-142 AT1G18370 1518 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.006G040700 [exp] 304 / 8e-92 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G013300 [exp] 284 / 6e-87 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10015448 pacid=23173673 polypeptide=Lus10015448 locus=Lus10015448.g ID=Lus10015448.BGIv1.0 annot-version=v1.0 ATGATTGGATCATCATGGGGCGGGGACGAGTCGGTGTTGGGGGACATACACGGAGTCGGCGACGAATCGGAAAAGATTCACGTCTCCATTAGGCTCAAAC CAGTGATCAACGACACAGAAACAGCCAAGAATGACGTCGTCTCCGATTGGGAATGCATCAACTCCACCACCATCATCTTCAAGTCATCCATGCCTGATCG GTCCATGCTTCCCTCCGCCTACACATTTGATAGAGCGTTTGGGCAAGATTCCAGCACGAAGCAAGTCTACGAGGAAGCGGCTAAAGAGGTTGCTCTCTCC GTCCTCAGCGGCGTCAATGCAAGCATTTTTGCTTATGGGCAAACAAGCAGCGGGAAAACGTATACAATGAGGGGAATCACAGAGTATGCCATGTCTGACA TATTCCAATACATAAATCAGAACCAAGAAAGAGAGTTTGTAATGAAATTTTCTGCCATGGAAATCTATAATGAAGCTGTTAGAGACCTTCTTAGCTCGGA TCCTACTCCTCTCAGGCTTGTCGATGATCCGGAGAGAGGAACCGTTGTTGATAAACTCATAGAAGAGCCTATTGAAGACTGGAACCACCTGCATGAACTC CTTTCAATTTGTGAAGCTCAAAGGCACATAGGAGAGACGGCTTTGAATGAGTTCAGTTCTAGATCCCATCAAATCCTTCGCTTAACAGTAGAAAGTTGTG CTCGTGATAACTTTGATGCGGAGAATTCGACCACTCTTACAGCTTCATTGAATCTTATCGATTTGGCAGGGAGTGAACGAGCTTCTCAAACATGGTCCAC TGGTACAAGGCTAAAAGAAGGTTCCCACATTAACCGAAGCTTGCTTACTCTAGGAACTGTAGTTCGCAAACTGAGCAAGGGAAAATATGGGCACATACCG TATAGAGAATCCAAGCTGACGAGGATACTACAGAATTGTTTGGGAGGCAATGCCAAGACGGCCATAATTTGCACGATGAGCCCATCGCATTGTCATGCCG AACAATCAAGAAACACCCTTGTGTTCGCCAGTTGTGCCAAACAAGTGTCAACAAGCGCACAAGTCAATGTGGTGATGACGGACAAAGCTCTAGTGAAGCA ACTCCAAAAGGAGATCTCTAGATTGGAGGGCCAGGTGAAGAGTTTCAGATTGGTGTCTAAAGCCAGTGCATTACTGAGAGAAAAAGACCTTCTGATTGAA AAGATGGAGAAAGAGATGAAGGAACTAACCTGGCAACGTGATCTCGCCCAATCACATATTGATAGTTTGCTGAAATCAGTAGGGGAAGATCGATTATTCA GGGTGGAAGAGAATTCAGTACCAGAGACACCAGATGCACTTCTTGCAAGAAACAACACTGAGAGGGAATATGACCAGTTCAGCATGCCTAGCCCTATCCC CAAGAGGCAAATGCTAGAGACACAAGTCAGCTGGGAGCCAACTCTATGCAATTAG
AA sequence Show only first row Show all	>Lus10015448 pacid=23173673 polypeptide=Lus10015448 locus=Lus10015448.g ID=Lus10015448.BGIv1.0 annot-version=v1.0 MIGSSWGGDESVLGDIHGVGDESEKIHVSIRLKPVINDTETAKNDVVSDWECINSTTIIFKSSMPDRSMLPSAYTFDRAFGQDSSTKQVYEEAAKEVALS VLSGVNASIFAYGQTSSGKTYTMRGITEYAMSDIFQYINQNQEREFVMKFSAMEIYNEAVRDLLSSDPTPLRLVDDPERGTVVDKLIEEPIEDWNHLHEL LSICEAQRHIGETALNEFSSRSHQILRLTVESCARDNFDAENSTTLTASLNLIDLAGSERASQTWSTGTRLKEGSHINRSLLTLGTVVRKLSKGKYGHIP YRESKLTRILQNCLGGNAKTAIICTMSPSHCHAEQSRNTLVFASCAKQVSTSAQVNVVMTDKALVKQLQKEISRLEGQVKSFRLVSKASALLREKDLLIE KMEKEMKELTWQRDLAQSHIDSLLKSVGEDRLFRVEENSVPETPDALLARNNTEREYDQFSMPSPIPKRQMLETQVSWEPTLCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51150			ATP binding microtubule motor ...		Lus10015448 [exp]	0	1
AT3G03550			RING/U-box superfamily protein...		Lus10037264 [exp]	1.7	0.8499
AT5G42490			ATP binding microtubule motor ...		Lus10015449 [exp]	2.8	0.8215
AT3G03550			RING/U-box superfamily protein...		Lus10035677 [exp]	3.0	0.8117
AT5G22120			unknown protein		Lus10004788 [exp]	7.4	0.7438
					Lus10007244 [exp]	10.2	0.7682
					Lus10024103 [exp]	17.0	0.7326
AT5G20950			Glycosyl hydrolase family prot...		Lus10018102 [exp]	29.5	0.6780
AT1G75800			Pathogenesis-related thaumatin...		Lus10023897 [exp]	32.1	0.7240
AT3G51150			ATP binding microtubule motor ...		Lus10010624 [exp]	32.9	0.6812
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026827 [exp]	33.2	0.6875

Compare expression of checked genes

Lus10015448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.