Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42490 197 / 2e-55 ATP binding microtubule motor family protein (.1) AT2G21300 184 / 2e-51 ATP binding microtubule motor family protein (.1.2) AT3G51150 184 / 4e-51 ATP binding microtubule motor family protein (.1.2) AT4G38950 180 / 7e-50 ATP binding microtubule motor family protein (.1.2) AT1G18370 177 / 1e-48 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT5G66310 171 / 2e-46 ATP binding microtubule motor family protein (.1) AT4G24170 160 / 1e-42 ATP binding microtubule motor family protein (.1) AT3G43210 151 / 8e-40 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT2G24650 44 / 0.0002 B3 REM13 DNA binding;DNA binding;sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010624 [exp] 726 / 0 AT3G51150 577 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10033920 [exp] 508 / 4e-173 AT3G51150 578 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10031086 [exp] 187 / 5e-52 AT2G21300 1026 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10025969 [exp] 187 / 6e-52 AT3G51150 694 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10014268 [exp] 186 / 1e-51 AT5G66310 667 / 0.0 ATP binding microtubule motor family protein (.1) Lus10035471 [exp] 183 / 8e-51 AT2G21300 1011 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10032452 [exp] 152 / 4e-40 AT1G18370 1452 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Lus10042952 [exp] 150 / 3e-39 AT1G18370 1206 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Lus10005181 [exp] 148 / 1e-38 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027600 [exp] 334 / 2e-106 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.007G014800 [exp] 196 / 3e-55 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.009G124500 [exp] 195 / 7e-55 AT2G21300 752 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.005G116900 [exp] 195 / 8e-55 AT3G51150 668 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.004G162800 [exp] 194 / 2e-54 AT2G21300 1031 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.012G054400 [exp] 167 / 3e-45 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.015G044600 [exp] 161 / 4e-43 AT1G18370 1518 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.006G136600 [exp] 160 / 1e-42 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11995 [flax] [poplar] DUF3490 Domain of unknown function (DUF3490)
Representative CDS sequence Show only first row Show all	>Lus10015449 pacid=23173693 polypeptide=Lus10015449 locus=Lus10015449.g ID=Lus10015449.BGIv1.0 annot-version=v1.0 ATGGAAGATAGCACAACAATGAAAAGGATTGGTGATGAAGCTGTTGTGTTATCCACCATTGAGGAGACCAAAGAGCTATGCAATGTTGGTTCTTATGACA TACATGAGATCCTCAAGCGGAGACTTGAGGAATTGCAGAAGACAATTGAGACTTTAGACAAGTCGTCTCCTTCTCAAAAAGGGGTGTCATGGACTAGAAG CAAAAGTAAGAAAGCAGTAGTGATGACTATTCCCTCTGCACTTTGGTCCAAAATAGAAGAAGAAGACCAAGAGGATGAAGAAGACAGCGATGAGGAAGCC TATGAGAGTAGACACTCGAGCTCAACTGAAGAGGAGCTTCCTGAAAGACGAGAAAAGTCAGAGAATAAGGCTACTCTTCAATTAGAACATCAAGATTCAA AGTATACAGAGAGCTTTGCCGTGCCGAAAGAGGACGAGATCATCAAAGAGATTGATGTCCACTTTGATGATAAAACCAGTGTCCTAAACTCTGTCGCAGG AGGGAAGAAGACCAAAAAGACCAAACATCAGAAACAACCAACCAGGGAAATTGGCGTCATTTCGTTAGTGGAACCATTAAGGAGAACTCCAGAAGGAAGA CCACAACGAGCAAGAGACCTTGCCTCAGAGACTCACCTTCGTAGTTCAAACCAGAGCCAAGCTAACTGGTCACAGAAATTTGAGAGGTATCGGAAGAAAA TCATTGAGCTGTGGGCAAAATGCAACGTACCTTTGGTCCATAGAAGTTACTTCTTCCTGCTCTTCAAAGGTGATCCTTCAGACAACGTCTACTTGGAAGT TGAGCTCAGGAGACTCTACTTCATCAAGGACACTGCTGCTCGTGGCAATAATCCAACCGTAGACAGTCAAGTCGTCACATACACCTCAAGTCCAAAGAAT CTGAATCGGGAGAGGATAATGTTGGCCAAGCAATTGCAAAAGAAGTTCACGAGGAGGGAAAGGGAAGAGCTTTACCTCAAGTGGAACATAGACATAGATA CAAAGCAGAGAGGCCTGCAACTGGTGGGGAAGTTGTGGACGGACATGAGAGACATGAGACACGTAAAGGAAAGTTCTATCCTCGTCGTGAAGTTGATCGG GTTTGTTGAGCCGCAATACGCACCCAAGGAGCTATTCGGTCTCAGCTTCTTGAACCCGTCGGCTAACCAGAAGTCATCTAGCTGGAGAGACAACGTGTCT TCTCTTCTGTAA
AA sequence Show only first row Show all	>Lus10015449 pacid=23173693 polypeptide=Lus10015449 locus=Lus10015449.g ID=Lus10015449.BGIv1.0 annot-version=v1.0 MEDSTTMKRIGDEAVVLSTIEETKELCNVGSYDIHEILKRRLEELQKTIETLDKSSPSQKGVSWTRSKSKKAVVMTIPSALWSKIEEEDQEDEEDSDEEA YESRHSSSTEEELPERREKSENKATLQLEHQDSKYTESFAVPKEDEIIKEIDVHFDDKTSVLNSVAGGKKTKKTKHQKQPTREIGVISLVEPLRRTPEGR PQRARDLASETHLRSSNQSQANWSQKFERYRKKIIELWAKCNVPLVHRSYFFLLFKGDPSDNVYLEVELRRLYFIKDTAARGNNPTVDSQVVTYTSSPKN LNRERIMLAKQLQKKFTRREREELYLKWNIDIDTKQRGLQLVGKLWTDMRDMRHVKESSILVVKLIGFVEPQYAPKELFGLSFLNPSANQKSSSWRDNVS SLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42490			ATP binding microtubule motor ...		Lus10015449 [exp]	0	1
AT3G03550			RING/U-box superfamily protein...		Lus10037264 [exp]	1.4	0.8582
AT3G51150			ATP binding microtubule motor ...		Lus10010624 [exp]	1.7	0.8267
AT3G51150			ATP binding microtubule motor ...		Lus10015448 [exp]	2.8	0.8215
AT4G31370		FLA5	FASCICLIN-like arabinogalactan...		Lus10026223 [exp]	3.5	0.8308
AT3G23870			Protein of unknown function (D...		Lus10016636 [exp]	9.9	0.7716
					Lus10007244 [exp]	11.5	0.7721
					Lus10022875 [exp]	13.6	0.7956
AT3G03550			RING/U-box superfamily protein...		Lus10035677 [exp]	14.8	0.7495
					Lus10035963 [exp]	25.1	0.7265
AT4G21310			Protein of unknown function (D...		Lus10018386 [exp]	27.3	0.7686

Compare expression of checked genes

Lus10015449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.