Plant FIBer expression Database

Lus10015450 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G19070 132 / 1e-38 Putative membrane lipoprotein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G132400
[exp]
142 / 2e-42 AT4G19070 126 / 4e-37 Putative membrane lipoprotein (.1)
PFAM info
Representative CDS sequence
>Lus10015450 pacid=23173678 polypeptide=Lus10015450 locus=Lus10015450.g ID=Lus10015450.BGIv1.0 annot-version=v1.0
ATGATAATAAAAGGGATATTCAGAAGGTATGAGAGGTGGAACCCAGTCCATCCAACGCTAGGAGCTTTCTGGGGAATGGGATTGGGGATTGGATGTGGTG
TTGGTTGGGGTCCTGGATTTGGTCCTGAGGTCATTGGTTATGTTGGTGCTGGTTGTGGTATCGGCTTCAGTGTCGGTTTCACCTTCGCTGGGATCGGCAT
TGGCCTCCCTGCCAATTACATCTTTCAAGCTCCTTACAATGCTGTTCGGGCGACCACTCAGTCGTCAAATGGGTTCTTTTTGCTAAGGGATGCAGTTGGG
GATGGCTGGAACAGTACCGTAGCACCATGTTTAGCCGGATTGCAAAGAGGCGCAAGTGTAACACTAGGTAGCTTTGGTAAGAAATTCCAGATGGACAAAC
TGTCTAGATCAGTTTCAGGAGCAAGAGGGAAAGGTAAGGTTACTCACAATGCTTGGATTCTTTCATTGATGTTTGTGGTCATACTGCGATTTGAGGGTGT
ATGCATGCAGGTACAGAGAGTTAAAGCATACTGGGTGGATGTTAAACGAACCTATTCTCTTTGTGGTAGGTTGCCAATTGCTGTTGTATCGTATTTATAT
CAACTGGTTTGGGATAGTCATATAGAAGAGGTTTATACAACTTCATTTGTTGCAGAGATCATTGAAGAACCTCCAAAACTGCCCTCGAGGTCTAGCTAA
AA sequence
>Lus10015450 pacid=23173678 polypeptide=Lus10015450 locus=Lus10015450.g ID=Lus10015450.BGIv1.0 annot-version=v1.0
MIIKGIFRRYERWNPVHPTLGAFWGMGLGIGCGVGWGPGFGPEVIGYVGAGCGIGFSVGFTFAGIGIGLPANYIFQAPYNAVRATTQSSNGFFLLRDAVG
DGWNSTVAPCLAGLQRGASVTLGSFGKKFQMDKLSRSVSGARGKGKVTHNAWILSLMFVVILRFEGVCMQVQRVKAYWVDVKRTYSLCGRLPIAVVSYLY
QLVWDSHIEEVYTTSFVAEIIEEPPKLPSRSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G19070 Putative membrane lipoprotein ... Lus10015450
[exp]
0 1
AT2G28930 APK1B protein kinase 1B (.1.2.3) Lus10040806
[exp]
1.4 0.8728
AT2G02410 unknown protein Lus10026272
[exp]
2.2 0.8552
AT2G02760 ATUBC2 ubiquitin-conjugating enzyme 2... Lus10030786
[exp]
2.6 0.8487
AT1G67620 Lojap-related protein (.1) Lus10015822
[exp]
3.2 0.8609
AT5G59610 Chaperone DnaJ-domain superfam... Lus10016510
[exp]
4.6 0.8559
AT1G08980 ATTOC64-I, ATAM... ARABIDOPSIS THALIANA TRANSLOCO... Lus10004466
[exp]
5.3 0.8555
AT3G49870 ATARLA1C ADP-ribosylation factor-like A... Lus10025201
[exp]
5.5 0.8504
AT5G06440 unknown protein Lus10021251
[exp]
6.2 0.8177
AT1G70100 unknown protein Lus10010725
[exp]
6.7 0.8420
AT1G66140 C2H2ZnF ZFP4 zinc finger protein 4 (.1) Lus10030764
[exp]
7.9 0.7983

Lus10015450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.