Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44730 418 / 7e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G14310 50 / 4e-07 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G41250 45 / 2e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001353 [exp] 301 / 2e-103 AT5G44730 270 / 8e-91 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10037187 [exp] 60 / 2e-10 AT1G14310 335 / 3e-117 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10036740 [exp] 58 / 9e-10 AT1G14310 343 / 2e-120 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10010452 [exp] 54 / 2e-08 AT2G41250 367 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10039005 [exp] 50 / 5e-07 AT2G41250 384 / 4e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10027299 [exp] 50 / 5e-07 AT2G41250 383 / 8e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G154500 [exp] 454 / 4e-164 AT5G44730 422 / 3e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.010G093900 [exp] 54 / 1e-08 AT1G14310 319 / 9e-111 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G040800 [exp] 48 / 2e-06 AT2G41250 362 / 8e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G037600 [exp] 44 / 4e-05 AT2G41250 371 / 2e-130 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10015451 pacid=23173682 polypeptide=Lus10015451 locus=Lus10015451.g ID=Lus10015451.BGIv1.0 annot-version=v1.0 ATGGCTGCATTGTTGTCTAAGTTGCGATGCATCACTGTGGATGTGACGGGCACGCTAATTGCTTACAAAGGGGACCTTGGTGACTACTATTGCATGGCTG CAAAATCTGTTGGATTGCCATGTCCTGACTACAAACGTGTTCATGAGGGTTTCAAAATTGCTTATACAGACATGGCCAAGAAGTATCCCTGTTTTGGTCA TGCTGCTAAAGTACCCAACATTGTTTGGTGGAAGACCTGCGTCCGAGATTCATTTGCCAAGGCTGGATATGATTATGATGAAGAGACATTTGAGAAGATC TTCAGACGCATATATGCTTCCTTTGGTTCCTCAGCACCTTATAAGATCTTCCCAGACTCCCAGCCGTTCCTCAGATGGGCACGTGAGAATGGTCTCATCG TCGGCATCGTTAGCAATGCTGAATACCGTTACCGGGATGTGATCCTGCCTGCTATGGGTTTAAACCAGGGTTCAGAGTGGGACTTTGGTGTGTTCTCCGG CCTTGACGGTGTCGAGAAACCAGACCCGCGCATCTACAAGATAGCGTTAGAAAGAGCTGGGAACATTCCACCTGAAGAAACTCTACACATAGGGGATAGC ATGAGGAAGGACTACTCCCCTGCTAAGAGCGTGGGGATGAACGCGGTGCTGTTGGATCGATTCAAGACTCCTGATGCTGAAGAATGGAAAAGAAGTGGGG CACCTGTGTTTCCTGACCTTGTTGCTGTACAGGAATATCTTACATCTACCGGATGA
AA sequence Show only first row Show all	>Lus10015451 pacid=23173682 polypeptide=Lus10015451 locus=Lus10015451.g ID=Lus10015451.BGIv1.0 annot-version=v1.0 MAALLSKLRCITVDVTGTLIAYKGDLGDYYCMAAKSVGLPCPDYKRVHEGFKIAYTDMAKKYPCFGHAAKVPNIVWWKTCVRDSFAKAGYDYDEETFEKI FRRIYASFGSSAPYKIFPDSQPFLRWARENGLIVGIVSNAEYRYRDVILPAMGLNQGSEWDFGVFSGLDGVEKPDPRIYKIALERAGNIPPEETLHIGDS MRKDYSPAKSVGMNAVLLDRFKTPDAEEWKRSGAPVFPDLVAVQEYLTSTG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10015451 [exp]	0	1
AT5G08570			Pyruvate kinase family protein...		Lus10041003 [exp]	1.0	0.9627
AT5G25940			early nodulin-related (.1)		Lus10019434 [exp]	2.0	0.9617
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10006032 [exp]	2.4	0.9609
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10041071 [exp]	4.2	0.9574
AT5G39890			Protein of unknown function (D...		Lus10015360 [exp]	4.5	0.9594
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10021241 [exp]	5.3	0.9605
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10015826 [exp]	6.5	0.9567
AT3G27220			Galactose oxidase/kelch repeat...		Lus10032070 [exp]	7.3	0.9303
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Lus10017045 [exp]	8.5	0.9533
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	9.5	0.9422

Compare expression of checked genes

Lus10015451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.