Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22480 697 / 0 ZPR1 zinc-finger domain protein (.1) AT5G37340 689 / 0 ZPR1 zinc-finger domain protein (.1.2.3) AT3G13690 112 / 3e-25 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G55200 110 / 1e-24 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G56790 107 / 2e-23 Protein kinase superfamily protein (.1) AT4G02630 100 / 1e-21 Protein kinase superfamily protein (.1) AT1G01540 96 / 3e-20 Protein kinase superfamily protein (.1.2) AT3G26940 95 / 3e-20 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT1G10620 95 / 1e-19 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT5G63940 92 / 6e-19 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001350 [exp] 1820 / 0 AT5G22480 724 / 0.0 ZPR1 zinc-finger domain protein (.1) Lus10017273 [exp] 112 / 2e-25 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10001996 [exp] 112 / 5e-25 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10006148 [exp] 111 / 7e-25 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018944 [exp] 109 / 2e-24 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10013566 [exp] 108 / 3e-24 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10040097 [exp] 104 / 2e-22 AT1G55200 444 / 5e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10011098 [exp] 102 / 5e-22 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10030950 [exp] 102 / 8e-22 AT3G13690 422 / 2e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G075600 [exp] 712 / 0 AT5G22480 758 / 0.0 ZPR1 zinc-finger domain protein (.1) Potri.001G200000 [exp] 110 / 2e-24 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G185500 [exp] 109 / 2e-24 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.003G034900 [exp] 109 / 3e-24 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 105 / 8e-23 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.006G150100 [exp] 104 / 1e-22 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G154000 [exp] 100 / 1e-21 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 96 / 2e-20 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G152000 [exp] 96 / 6e-20 AT5G56890 846 / 0.0 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 94 / 9e-20 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF03367 [flax] [poplar] zf-ZPR1 ZPR1 zinc-finger domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10015454 pacid=23173626 polypeptide=Lus10015454 locus=Lus10015454.g ID=Lus10015454.BGIv1.0 annot-version=v1.0 ATGGGTGCTCCTAAGATATCTGCACCTCCAAGGGAGGCGGAGAGTGTGATTGTTGTGATAGATGGTAATCGAAATAAGCACAATGTTGACGCCATGGATT GGGCTCTCAAGCACGTGGTTCGACGAGGAGATAGTGTTATTGCTCTTGGAGTAATAGGTGGGTTTGGGATGAAGAACACTTGCTTCCCATTCTACATGGG CGTTGGCTTCTCTGGAATCCGGGAAAGATTAGAGTTTTCAACTTTAAGGCAAGAGATGAGACCCAAGGTACTTGGAGAAGAAATTGAGAGAAAGAAACAA CAGTATCAGAATAACCTGCAACCGTTCTATCGAAAATGCAAAAAGAATGAGGTGAACTTAGAAATCAAGCTGACATTCGGTTGCTGCCCTGTAAAGATTA CGGTAGAACAAGCTTGGAGCTCAAATCCGCGGTGGATTGTTTTAGATAGCAATTGGAAGAAGTATAAATCGATCATATACAGCAAAGTGGGATGCAGCAT TGCAGTGATGAAGGGAAATGATCTAGCAACTTTGATTCCATCAAGGAACAGTCAAGCTGGAACATCTAGTATTGTCTCTTGCAGCAACCAAAGCGAGCTT AATGTTACTGATGATGGTGAGTCATCAGCATCAGCATCAGCATCAGCATCAGCATCAGCATCGGCATCAGCATCGGCATCCATGCAATCATCAGAGTCAG CAGGTGAAAGCTCTGGATGGTACCCATTATCCTGGAGAATTGGATTTCCTCGAGCATTTTCCCAAACAGATTTGGAGGTTATGACAAATGGCTTCTCCAA AGACAACATCGTTCCCCATGGACCAGATGACATTAGAATCTACGAAGGGATATTCCAGCAAGCTCCCGTTCTGATCAGATCTTTCGTGGAAGATGATGAA CGCTTTTGGACAGCCCTCACAATCTTATCCAGGATCCGCCACAAGAACATAATGACCCTTGTAGGCTACTGCTGCTATGACAACTCCACCTTCTTGATTT TCGATAACCCTTGCATGGGTTCTTTGGAAATCAACCTTCAAGTTGATGATTTGGCGAGCAAGTTATCCTGGAAAGCAAGGTGGAACATTGCTCTGGAAAT AGGTCAGAGCCTGCAGTATCTTCACGAAGAATGCGCTACTGATGGAGCCATTGTTCACCTCTCTGTTTGTTCTTCTCATGTCAGCTTATGTTATGGATCC ATCACTATGCTTGCCTACTTTGCAACCGCTAGATTCCTTAAAGATGAAGGGGCGAATGACTGTAAAACTCGAATGGGGACAAACGAGGAGCACGATGAAC TGATAGCTGTGGATATACACGACTATGGAGTGCTCCTGATCGAGCTCGTCAGCGGAATGAGTGCCCGGCTGTTCCAGAGACAAGGTGTGGGTCAAAGCCT TATTGACTGGGCGGTGCCGCTTCTGGAAAATGGGTGTATAGATGCAGTGTTAGACCCCAGGGTGGATGAAGATACAAATGATAGGAGTATGATTCAGAAG CTGGTCAATGCAGCTTTGGTTTGCCTGAATATTAACGATGAATCTGCAGGAAAACACCAGCTTTCAATGAACCAGGGGATGACAAGGTTGTTGCTGACTT CGATTCCTCACTTCAGAAAGATCCTGTTATCCGCATTCGAATGCCCGCATTGTAATGAGAGGAATAATGAAGTGCAGTTTGCTGGTGAAATCCAGCCACG GGGTTGTTGTTACTACCTGAATGTCCAACCAGGCAACCAGAAGGCACTAGATCGACAAGTTGTAAAATCTGAGTCTGCAACCATAAAGATTCCTGAATTG GACTTCGAGATTCCTCCTGAGGCACAACGTGGTAGCCTATCAACAGTAGAAGGAATTTTGTTACGTGCGGCTGATGGCTTGGAAGCTCTTCAAGAAGAAC GCAGGAAAGTGAATCCTGAAACAGCTGAAGCACTGGATAAATTCTTGATTAAGTTGAGGGAGTGTGCAACCGATGATTCATCATTTACTTTCATCTTGGA CGATCCCACTGGAAACAGCTTTATTGAGAACCCGTTCGCTCCATCACCAGATCCAGCGTTGAATATCAAGTTCTATGATCGAACTCCAGAGCAGCAAGCA TCTTTGGGATATCTTGCTAATCCTACTCAGCCTGTGACGGAGTCAAGATCTGTAGAGGCAGCAGATACTGATGTCAATCCACAAGCAGTAGAACCTCATG GATCAGTTGGAGCAGCAGCTGGTCATCGAGCCATTGCCCAGAGTAGTAGTGTGGATATTGCCGAGGCTATGTTTCGATACACTTCACCGGAGGAGGTGAT GACATTCCCGTCAACTTGTGGAGCTTGTAATGTCAGCTGTGTAACTCGGATGTTCGTCACTAACATCCCATACTTCCAAGAAGTAATTGTGATGGCATCC ACCTGTGATTCTTGTGGTTACCGCAACTCTGAGTTGAAGCCAGGCGGGGCAATTCCTGAGAAGGGGAAGAAAATAACACTTTGTGTGAAGCATGTTAAAG ACCTCAGCCGTGATGTTATCAAGTCGGATACAGCAGGTGTGATTATTCCGGAGGTAGATTTGGAATTGGGCAGTGGTACTCTGGGAGGAATGGTGACAAC AGTGGAGGGATTGATTACAAAGATCAGTGAAAGCCTTGAGAGAGTGCATGGATTTACATTTGGTGATAGCGTTGAGGAGAATAGGAAAACGAAATGGCAA GACTTTAGATCAAGACTGATCAAGCTTTTGAAGCTTGAAGAGCCCTGGACATTGATTCTAGATGATGCTTTGGCTAATTCTTTCATTGCTCCAGCAACAG ATGAATTGAAGGACGACCACCAGCTAACCTACGAGGAATACAAGAGGAGCTTCGAGCAAAACGAAGAGTTGGGACTAAACGATCTGGACACTTCATCAGC CGATGCTGCGTACAGTGACAGCACAGGCGTTGTGGACGTTAAGGATGATGCTGGGAGAATGAAAGAATTAGAAAGTAAAGTAAACTGA
AA sequence Show only first row Show all	>Lus10015454 pacid=23173626 polypeptide=Lus10015454 locus=Lus10015454.g ID=Lus10015454.BGIv1.0 annot-version=v1.0 MGAPKISAPPREAESVIVVIDGNRNKHNVDAMDWALKHVVRRGDSVIALGVIGGFGMKNTCFPFYMGVGFSGIRERLEFSTLRQEMRPKVLGEEIERKKQ QYQNNLQPFYRKCKKNEVNLEIKLTFGCCPVKITVEQAWSSNPRWIVLDSNWKKYKSIIYSKVGCSIAVMKGNDLATLIPSRNSQAGTSSIVSCSNQSEL NVTDDGESSASASASASASASASASASMQSSESAGESSGWYPLSWRIGFPRAFSQTDLEVMTNGFSKDNIVPHGPDDIRIYEGIFQQAPVLIRSFVEDDE RFWTALTILSRIRHKNIMTLVGYCCYDNSTFLIFDNPCMGSLEINLQVDDLASKLSWKARWNIALEIGQSLQYLHEECATDGAIVHLSVCSSHVSLCYGS ITMLAYFATARFLKDEGANDCKTRMGTNEEHDELIAVDIHDYGVLLIELVSGMSARLFQRQGVGQSLIDWAVPLLENGCIDAVLDPRVDEDTNDRSMIQK LVNAALVCLNINDESAGKHQLSMNQGMTRLLLTSIPHFRKILLSAFECPHCNERNNEVQFAGEIQPRGCCYYLNVQPGNQKALDRQVVKSESATIKIPEL DFEIPPEAQRGSLSTVEGILLRAADGLEALQEERRKVNPETAEALDKFLIKLRECATDDSSFTFILDDPTGNSFIENPFAPSPDPALNIKFYDRTPEQQA SLGYLANPTQPVTESRSVEAADTDVNPQAVEPHGSVGAAAGHRAIAQSSSVDIAEAMFRYTSPEEVMTFPSTCGACNVSCVTRMFVTNIPYFQEVIVMAS TCDSCGYRNSELKPGGAIPEKGKKITLCVKHVKDLSRDVIKSDTAGVIIPEVDLELGSGTLGGMVTTVEGLITKISESLERVHGFTFGDSVEENRKTKWQ DFRSRLIKLLKLEEPWTLILDDALANSFIAPATDELKDDHQLTYEEYKRSFEQNEELGLNDLDTSSADAAYSDSTGVVDVKDDAGRMKELESKVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22480			ZPR1 zinc-finger domain protei...		Lus10015454 [exp]	0	1
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10014257 [exp]	2.0	0.7520
AT2G45520			unknown protein		Lus10009304 [exp]	4.7	0.7757
AT5G62440			Protein of unknown function (D...		Lus10035009 [exp]	10.5	0.7261
AT5G64930		HYS1, CPR5	HYPERSENESCENCE 1, CONSTITUTIV...		Lus10016818 [exp]	13.5	0.7162
AT1G02290			unknown protein		Lus10018907 [exp]	17.4	0.7353
AT3G19630			Radical SAM superfamily protei...		Lus10020989 [exp]	20.9	0.7382
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027615 [exp]	33.2	0.7040
AT1G05430			unknown protein		Lus10010563 [exp]	35.9	0.6615
AT5G56940			Ribosomal protein S16 family p...		Lus10014281 [exp]	37.5	0.6623
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Lus10010210 [exp]	39.8	0.7107

Compare expression of checked genes

Lus10015454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.