Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71170 231 / 1e-73 6-phosphogluconate dehydrogenase family protein (.1) AT1G71180 226 / 1e-71 6-phosphogluconate dehydrogenase family protein (.1) AT4G29120 191 / 6e-58 6-phosphogluconate dehydrogenase family protein (.1) AT1G17650 65 / 1e-11 GR2, GLYR2 glyoxylate reductase 2 (.1) AT3G25530 65 / 1e-11 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001349 [exp] 365 / 2e-126 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1) Lus10012950 [exp] 170 / 2e-50 AT4G29120 456 / 3e-163 6-phosphogluconate dehydrogenase family protein (.1) Lus10034977 [exp] 99 / 8e-25 AT4G29120 232 / 2e-77 6-phosphogluconate dehydrogenase family protein (.1) Lus10015612 [exp] 72 / 2e-13 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10037629 [exp] 67 / 5e-12 AT1G17650 486 / 9e-174 glyoxylate reductase 2 (.1) Lus10023258 [exp] 65 / 3e-11 AT4G20930 479 / 4e-171 6-phosphogluconate dehydrogenase family protein (.1) Lus10038545 [exp] 62 / 1e-10 AT4G20930 451 / 3e-160 6-phosphogluconate dehydrogenase family protein (.1) Lus10016077 [exp] 62 / 4e-10 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1) Lus10034975 [exp] 45 / 2e-06 AT4G29120 132 / 1e-39 6-phosphogluconate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G211500 [exp] 306 / 4e-103 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.018G088000 [exp] 184 / 5e-55 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.003G040800 [exp] 72 / 6e-14 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1) Potri.014G197900 [exp] 64 / 3e-11 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.001G465600 [exp] 61 / 5e-10 AT4G20930 507 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.003G038450 [exp] 46 / 7e-06 AT1G17650 217 / 8e-71 glyoxylate reductase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03446 [flax] [poplar] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10015455 pacid=23173637 polypeptide=Lus10015455 locus=Lus10015455.g ID=Lus10015455.BGIv1.0 annot-version=v1.0 ATGAATATAATAGAAAAAGTAGAATGGAGCGCTTCCCTGAGATGCTGGATTGGTGTGCGAAATTCTTCAGTTGGAGACGAAAGCCTGCAATCATGTCTGC TGTTGGGACCAAATCCCAAGCCGTTGCCACTTGCCACTCAACTCCCGATGTTACCTCTCAGCCATTGCAGCCGACTGAAGGAACCCAGACCTCGTCAGAA ACTAAGATATATCACCGGCGGCAAAACTAAGCAGCCAAGTGAAACTGAACCGAACTTGGGCGATCGAGAACAATCTAGCTCGTTTCTGACTTATCAACTC AATTACCACTTCAAACAGGGAGAGGTTTTTTCTCCGAGATTTAGCAGGGAGAAGCAGAAGGATAGAAGGAGGAGCTGCAATTATTTCAGCTGTCAGTTGC CAGTTTCCGTCGACTGTCCCTCTCCTCCCTCACCCCGGAACGCAAGAACAGAGTATGAAAACAGTAGGATTCCCTTCGGGGTAATAGTCGACACCACGAG TAGCCATCCGGGGCTAGCACGGGAGATTTTCGATGCTGCTCGACGTAAAGGCTGCTGGTCTGTTGATTCTCCGGTTTCAGACGGCGACATCGGCGCAAGA GATGGGAAGTTGGCTATATTCGCTCGAGGGGATGAAGAGGTAGTCAAGTGGCTGTCGCCTCTATTTGATGTGTTGGGGAAAGTTACTTACATGGGCGGAT CAGGGTGTGGGCAAAGTTGCAAGATTGCGAACCAGATTGTGGTGGGGGTTAATTTGTTGGGGTTAACTGAAGGGCTGTTTTTTGCTGAAAAATCTGGACT GGATGCGAATGAGTTTGTGAATGCAGTGAAGGGAGGAGCCGCTGGGTCAATGGTGATGGAGTTGTTTGGGAAGAGAATGATTGAGAGGGACTTTAGGCCT GGTGGATTTGCGGAGTATATGGTTAAGGACATGGGAATGGGTGTGGATGTTGTGGAAGAGAGTGAGGACGATAGTAAAGTCCCAGTCTTGCCTGGTGCTG CTCTGTGCAAGCAGCTCTTTAGTGGAATGGTTGCCAATGGAAATGGAAAGCTTGGAACCCAAGGTCTTATCACTGTGATTGAGAAGCTCAATGGCAAGTA A
AA sequence Show only first row Show all	>Lus10015455 pacid=23173637 polypeptide=Lus10015455 locus=Lus10015455.g ID=Lus10015455.BGIv1.0 annot-version=v1.0 MNIIEKVEWSASLRCWIGVRNSSVGDESLQSCLLLGPNPKPLPLATQLPMLPLSHCSRLKEPRPRQKLRYITGGKTKQPSETEPNLGDREQSSSFLTYQL NYHFKQGEVFSPRFSREKQKDRRRSCNYFSCQLPVSVDCPSPPSPRNARTEYENSRIPFGVIVDTTSSHPGLAREIFDAARRKGCWSVDSPVSDGDIGAR DGKLAIFARGDEEVVKWLSPLFDVLGKVTYMGGSGCGQSCKIANQIVVGVNLLGLTEGLFFAEKSGLDANEFVNAVKGGAAGSMVMELFGKRMIERDFRP GGFAEYMVKDMGMGVDVVEESEDDSKVPVLPGAALCKQLFSGMVANGNGKLGTQGLITVIEKLNGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71180			6-phosphogluconate dehydrogena...		Lus10015455 [exp]	0	1
AT1G44790			ChaC-like family protein (.1)		Lus10028029 [exp]	9.5	0.8523
AT4G27130			Translation initiation factor ...		Lus10015124 [exp]	11.3	0.8796
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10011341 [exp]	21.1	0.8634
AT1G67910			unknown protein		Lus10034901 [exp]	21.4	0.8422
AT1G13570			F-box/RNI-like superfamily pro...		Lus10016297 [exp]	29.3	0.8454
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10021667 [exp]	34.6	0.8443
AT5G54940			Translation initiation factor ...		Lus10021532 [exp]	50.6	0.8545
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10027334 [exp]	55.7	0.8415
AT2G42780			unknown protein		Lus10031380 [exp]	59.0	0.8363
AT5G53220			unknown protein		Lus10001067 [exp]	59.5	0.8560

Compare expression of checked genes

Lus10015455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.