Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60890 995 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 987 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G09920 749 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT2G41210 532 / 9e-179 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G56960 510 / 3e-170 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G26420 390 / 6e-125 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G21980 375 / 2e-118 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 375 / 3e-118 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT3G07960 360 / 3e-113 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G01460 242 / 7e-72 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001377 [exp] 1518 / 0 AT1G60890 1044 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10020821 [exp] 1094 / 0 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10012689 [exp] 1080 / 0 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10014408 [exp] 765 / 0 AT3G09920 1228 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10023909 [exp] 758 / 0 AT3G09920 1210 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10021505 [exp] 745 / 0 AT3G09920 1180 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10022606 [exp] 743 / 0 AT3G09920 1179 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10010458 [exp] 506 / 3e-168 AT3G56960 1147 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10003819 [exp] 503 / 1e-166 AT3G56960 1148 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G211200 [exp] 1110 / 0 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 1097 / 0 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.006G121200 [exp] 753 / 0 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.002G088100 [exp] 556 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 466 / 6e-153 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 374 / 3e-118 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 374 / 4e-118 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.001G027900 [exp] 368 / 4e-115 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.016G036800 [exp] 366 / 1e-114 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.003G196000 [exp] 361 / 1e-112 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10015456 pacid=23173666 polypeptide=Lus10015456 locus=Lus10015456.g ID=Lus10015456.BGIv1.0 annot-version=v1.0 ATGCTTGCATCTTTTGAGGCTGTGGGGGTAGAACTGGAGCTGCAAATGGTGGTGTTGCGCCAACTCTTCTTAGAAGAGAATGAAAGGATTAATAGGAAGG TCTTGTCAAATGGAGATATCTACCTCGGCGATTTTAAGGGGGAACTTCCCCATGGGAAAGGCAAATACATGTGGTCAGATGGCACAGTGTATGATGGTGA ATGGGAAGAGGGCAAAATGACAGGAAAGGGACAGATACAATGGGCTGCAGGACCCAAATACGAAGGCCAATTCTCCGGTGGTTATCTTCATGGCTTTGGC ACCTTCACTCGTCCTGATGGCTCCGAATACCGAGGGTCGTGGAGGATGAATATACAGCATGGCCTTGGTAAGAAGCAATACCCCAATCTGGATTCTTACG AAGGTTGTTGGAAAGAAGGGGTTCATGAAGGTAACGGGCGCTACTCTTGGAGTAACGGAAATGTATATGTAGGGAACTGGAGAAGTGGAATCATGAACGG TAGAGGAATTATGAAATGGATAACTGGTGATGTCTTTGATGGCTCTTGGTCGAATGGTATGAGGCACGGTTCTGGAGTTTACAGGTTTGCAGATGGGGGT TTCTACTTTGGAACGTGGACGAAAGGATTGAAAGATGGGAAAGGGACGTATTATCCTGCTGGAACTAAGCATCCATCTTTAAAGAGATGGTGTAAATCGC TAGGTTATGATAATATAGAAAATGGTTTTCAGTCCTATTCATCCACATTAAATTCAGTAGAAGTCGAGCCTCAGAGACCAAGTATCAGGCGCAGTGTCTC GGAAATGTCAAGCAGTGGAAGTTTAAGGGGTTCAGGTAGGATAACGCACAGAACAATATCAATGGACAGAAATTCGAGCCGCGGTCATTCTGCTAGAGAG TTTGTATCTCATGACATGTCAGGTGTTCTGTCTCAAATCTCTGACGATGTTCATAGCGAGGTGCTAGACAATGATACCGTGGCTTATGAACGAGAGTACA TGCAAGGGGTGTTGATCAAAGAGAGAATAATAACTACAGAGAAATCGTGGAAAAGTAAAACCAAAAACAAAAACAAATTCCATGCAAAAGAAGCCCATAC AAAGTCATGCATGCGAATTTTCCAGCACCGTCGGAGCTATTATCTAATGTTAAATCTGCAACTCGGTATCAGGTATACTGTTGGAAAGATCACTCCAGTG CCCATGCGTGAAGTCCGCCCTTCTGATTTTGGAGAACGAGCTAGAATAAGGATGTATTTTCCTAGAAAAGGATCCCAGTTCACCCCGCCTCACTACTCTA TTGATTTCTACTGGAAAGATTATTGTCCTATGGTCTTCAGGAATCTAAGAGAGATGTTCAAATTAGATGCAGCGGAGTACATGATGTCCATTTGCGGCGA TGATGGTCTAACAGAGCTTTCTTCCCCTGGGAAAAGTGGCAGTATCTTCTATCTCTCCCACGATGATAGATTTGTGATCAAGACATTAACGAAATCGGAG CTCAAGACCCTGCTTAGGATGTTGCCAAAATATTACTCCCATGTAGGCAAACATGAAAATACTCTCATAACAAAGTTTTTCGGGGTCCACCGAATTACGT TACGCGGTGGACGAAAGGTGCGGTTTGTGGTAATGGGTAATATGTTTTGCACAGAGTTGAGAATTCATCGTCGTTACGATCTAAAAGGCTCATCTCATGG AAGATGTACAGATAAAGATAAGATCAAAGAGACTACCACATTAAAGGACCTTGATCTTGATTATGAATTTCACATGGACAAATTTTTGAGACATGCCCTC TTCAAACAACTTCAACTGGATTCCAAGTTCTTAGAATCTCAGAACATAATCGATTATAGCCTTCTCTTGGGGCTTCATTTCAGAGCGCCAGAACAACTCA AGGCCGTTTTAGAGCCTACTGCTGCTGCACCGAATCATAATAGTTCCTCTGCGGATGATGGTGTGTCCTCTCAAGGGGAGCCATTCATACCTCCAACAGG ATTGATCTTAGTAACTCATGAACCTGGTTCTGTCAGCACTGCACCTGGTCCTCACATCAGAGGCAGCACACTGAGAGCTTTTTCCGTAGGCGACAAGGAA GTCGACCTCTTACTGCCCGGGACTGCAAGACTGCGAGTTCAGTTAGGAGTGAACATGCCAGCTCAAGCGAGCCACAAGCTCCTGCAAGACGAGGGTGGTT CTGCGGAGGTCGAACTATTTGAGGTGTATGACGTAGTTCTGTACATGGGGATAATCGACATACTGCAGGAGTACAATGCTAGGAAGAAGGCTGAAAATGC TTACAAATCGTTCAAGTTTGACCCAGTGACGATTTCTGTTGTCGAGCCGAAGTTATACGCTAAGCGGTTCACTGATTTCTTGCAGAAAGTGTTTCCTGAA CCACCCTAA
AA sequence Show only first row Show all	>Lus10015456 pacid=23173666 polypeptide=Lus10015456 locus=Lus10015456.g ID=Lus10015456.BGIv1.0 annot-version=v1.0 MLASFEAVGVELELQMVVLRQLFLEENERINRKVLSNGDIYLGDFKGELPHGKGKYMWSDGTVYDGEWEEGKMTGKGQIQWAAGPKYEGQFSGGYLHGFG TFTRPDGSEYRGSWRMNIQHGLGKKQYPNLDSYEGCWKEGVHEGNGRYSWSNGNVYVGNWRSGIMNGRGIMKWITGDVFDGSWSNGMRHGSGVYRFADGG FYFGTWTKGLKDGKGTYYPAGTKHPSLKRWCKSLGYDNIENGFQSYSSTLNSVEVEPQRPSIRRSVSEMSSSGSLRGSGRITHRTISMDRNSSRGHSARE FVSHDMSGVLSQISDDVHSEVLDNDTVAYEREYMQGVLIKERIITTEKSWKSKTKNKNKFHAKEAHTKSCMRIFQHRRSYYLMLNLQLGIRYTVGKITPV PMREVRPSDFGERARIRMYFPRKGSQFTPPHYSIDFYWKDYCPMVFRNLREMFKLDAAEYMMSICGDDGLTELSSPGKSGSIFYLSHDDRFVIKTLTKSE LKTLLRMLPKYYSHVGKHENTLITKFFGVHRITLRGGRKVRFVVMGNMFCTELRIHRRYDLKGSSHGRCTDKDKIKETTTLKDLDLDYEFHMDKFLRHAL FKQLQLDSKFLESQNIIDYSLLLGLHFRAPEQLKAVLEPTAAAPNHNSSSADDGVSSQGEPFIPPTGLILVTHEPGSVSTAPGPHIRGSTLRAFSVGDKE VDLLLPGTARLRVQLGVNMPAQASHKLLQDEGGSAEVELFEVYDVVLYMGIIDILQEYNARKKAENAYKSFKFDPVTISVVEPKLYAKRFTDFLQKVFPE PP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10015456 [exp]	0	1
AT4G24450		PWD, GWD3, ATGW...	"phosphoglucan, water dikinase...		Lus10032829 [exp]	3.6	0.9090
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10007464 [exp]	4.9	0.9055
					Lus10031014 [exp]	7.5	0.8867
					Lus10035412 [exp]	7.7	0.8749
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10040113 [exp]	8.1	0.8560
AT2G41790			Insulinase (Peptidase family M...		Lus10042064 [exp]	8.5	0.8478
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10030216 [exp]	10.5	0.8691
AT3G25855			Copper transport protein famil...		Lus10035027 [exp]	12.6	0.8857
AT5G62960			unknown protein		Lus10027692 [exp]	13.9	0.8238
AT2G34540			unknown protein		Lus10042827 [exp]	14.6	0.8062

Compare expression of checked genes

Lus10015456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.