Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58110 288 / 7e-95 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT4G06598 246 / 6e-79 unknown protein AT1G35490 120 / 2e-31 bZIP bZIP family transcription factor (.1) AT2G42380 79 / 3e-16 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT3G58120 79 / 4e-16 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G04840 71 / 1e-13 bZIP bZIP protein (.1) AT1G43700 50 / 8e-07 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT1G06070 50 / 1e-06 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039902 [exp] 79 / 2e-16 AT3G58120 181 / 8e-56 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002185 [exp] 79 / 2e-16 AT3G58120 219 / 1e-71 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10017656 [exp] 79 / 3e-16 AT2G42380 305 / 1e-103 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10033630 [exp] 78 / 5e-16 AT2G42380 294 / 7e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10029773 [exp] 48 / 9e-06 AT1G43700 311 / 6e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10042802 [exp] 47 / 9e-06 AT1G43700 313 / 1e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10019376 [exp] 44 / 0.0001 AT1G06070 384 / 6e-131 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008150 [exp] 44 / 0.0001 AT1G06070 346 / 4e-119 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10033174 [exp] 43 / 0.0003 AT4G38900 283 / 7e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G014800 [exp] 418 / 4e-146 AT1G58110 304 / 3e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.004G219100 [exp] 414 / 8e-145 AT1G58110 303 / 8e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.015G147800 [exp] 134 / 6e-36 AT1G58110 153 / 4e-43 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.010G242800 [exp] 81 / 6e-17 AT5G04840 228 / 2e-73 bZIP protein (.1) Potri.008G018400 [exp] 78 / 4e-16 AT5G04840 222 / 3e-71 bZIP protein (.1) Potri.001G374200 [exp] 77 / 1e-15 AT3G58120 282 / 6e-94 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.019G091900 [exp] 76 / 4e-15 AT3G58120 285 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 74 / 1e-14 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G074900 [exp] 59 / 6e-10 AT2G42380 87 / 3e-20 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.017G027400 [exp] 52 / 5e-07 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015457 pacid=23173688 polypeptide=Lus10015457 locus=Lus10015457.g ID=Lus10015457.BGIv1.0 annot-version=v1.0 ATGGAAGATCCAAAAGGTTCATCAAACATGAGAAATTTGATGTACTCTACTAACCATCCCTTGCTTCCTCCAAGAATCCCATTTCCTACTTTTACCCCAG CATATGTTGATTATATTCCAAGCAATGTGGTTGGATCAAAAGCTATACAGAAACCCAGATCAGGGAATACTTTCCATCAGCGGACATCTTCTGAAAATTT CCTTTTGGAGGAGCAACCTTCTTGGCTTGATGATCTTCTTAATGAACCCGAGACACCAGTTCGTAGAGGAGGTCATCGGCGATCTTCAAGTGACTCATTT GCTTATGTAGATGCGGCCAATAATTCTAACGTAGATTATGCAGCATTTGATAACCACAGATATAAGAATGTGGCATCTGTACCTTTGTGGCAATCCAATG AGTTTGATTACCCAAAGGATGCCCGTCAAGCATCTCTATATGCAGAAGGAAATCTGCCGAAACAGAGAAATAGAGGCTGGGATTCATCTAAGAATTCTGC GACACGTCCAGGTGTGGTTTCTTCTGCTAGGGAGAATGTTGCTTCTCAGAATCCAGGGTTACCGTCTGTACAGCAGGGATCAGACGGATCTTCATCAGGT GGAAAGCAAGACGCTGTTGAATCCAGTCCTCATGATGGATCCTCCGAGAGGAAGGATGGATCTCATGCTAAGACTTCTGTTCCAGAGTGTGATACAAAAC GTGCTAAACAGCAATATGCACAACGTTCTCGGGTCCGGAAACTTCAGTACATAGCAGAGCTGGAAAGGAATGCTGAAGGATCTGAAGTCTCTGCAGAACT TGAATTTACAAACCAGAAAAATCTTATTTTAAGTATGGAGAATAAAGCCCTTAAGCAGCGACTGGACAACTTAGCACAGGAGCAGCTTATCAAACACCTG GAGCATGAAGTCTTGGAGAGGGAGCTTGGAAGATTGAAGGCCATGTATCAGCAACAACAACAACAACAGCCAGCGAAGCAACAGCTACCTTCCACCCATC GCCGGTCCAATAGCAGGGACCTCGAATCCCAGTTTGGGAACCTGTCTTTGAAACACAAGGATACGGGTGCTGGTGGGGACTCAATTGCCGGTCGACTGCA CATATAA
AA sequence Show only first row Show all	>Lus10015457 pacid=23173688 polypeptide=Lus10015457 locus=Lus10015457.g ID=Lus10015457.BGIv1.0 annot-version=v1.0 MEDPKGSSNMRNLMYSTNHPLLPPRIPFPTFTPAYVDYIPSNVVGSKAIQKPRSGNTFHQRTSSENFLLEEQPSWLDDLLNEPETPVRRGGHRRSSSDSF AYVDAANNSNVDYAAFDNHRYKNVASVPLWQSNEFDYPKDARQASLYAEGNLPKQRNRGWDSSKNSATRPGVVSSARENVASQNPGLPSVQQGSDGSSSG GKQDAVESSPHDGSSERKDGSHAKTSVPECDTKRAKQQYAQRSRVRKLQYIAELERNAEGSEVSAELEFTNQKNLILSMENKALKQRLDNLAQEQLIKHL EHEVLERELGRLKAMYQQQQQQQPAKQQLPSTHRRSNSRDLESQFGNLSLKHKDTGAGGDSIAGRLHI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10015457 [exp]	0	1
AT5G58190		ECT10	evolutionarily conserved C-ter...		Lus10027582 [exp]	3.5	0.8248
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	5.3	0.8317
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10013754 [exp]	5.3	0.8261
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10032466 [exp]	6.8	0.7940
AT1G24160			unknown protein		Lus10029213 [exp]	10.1	0.7999
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10040375 [exp]	10.4	0.8297
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10040038 [exp]	12.8	0.8094
AT4G27510			unknown protein		Lus10004528 [exp]	14.5	0.8242
AT1G79630			Protein phosphatase 2C family ...		Lus10000402 [exp]	14.7	0.7824
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10021805 [exp]	15.1	0.7782

Compare expression of checked genes

Lus10015457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.