Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25940 135 / 3e-41 TFIIB zinc-binding protein (.1) AT1G20065 81 / 1e-20 unknown protein AT4G07950 40 / 0.0001 DNA-directed RNA polymerase, subunit M, archaeal (.1) AT1G01210 40 / 0.0002 DNA-directed RNA polymerase, subunit M, archaeal (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030228 [exp] 40 / 0.0002 AT4G07950 120 / 6e-36 DNA-directed RNA polymerase, subunit M, archaeal (.1) Lus10005984 [exp] 38 / 0.0008 AT1G01210 112 / 2e-33 DNA-directed RNA polymerase, subunit M, archaeal (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G015000 [exp] 186 / 2e-61 AT3G25940 132 / 4e-41 TFIIB zinc-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF01096 [flax] [poplar] TFIIS_C Transcription factor S-II (TFIIS)
Representative CDS sequence Show only first row Show all	>Lus10015458 pacid=23173594 polypeptide=Lus10015458 locus=Lus10015458.g ID=Lus10015458.BGIv1.0 annot-version=v1.0 ATGTATGCAGGGTTTTACGGCGAGCTCCCGACTTCACCTTTAGCTTCGCGTCCCCGCCCGCCGTCACTTCGGCTTACTTTTTCCGTTTCCGGCGTTCGCT TCCCGGTTGGATCTTCCTCCACAAAGGGTTTCAGCTGTTGCTTGACGGCTCTGTTAGAAGTTCATAAAGCGATGATGGGTGCACGACCTGGTGACTTTAT GTTCTGCAACCTATGCGGCACAATGATGGTTTTGAGTTCTGCTGATCAAGTGGAATGCCCTCTTTGTAAATCTCATAAGAGGGGAAAAGGTGTGTTTGGA CAAGAAATATCTTACACTGTGTCTGCTGAGGACATCAGAAGGGATCTAGGTATTTCACATTTCGAAGGAAAAATGGAGGTGAAAGACATGGAGATAAATA AGCAGTGTGAGAAATGCAGCAACACAAAGCTCAAGTTTTCGACTAGACAGATGAGATCAGCTGATGAGGGGCAAACCACTTTCTACCATTGTTCTGTTTG TTCTCATACTTTTACTGAGAACTGA
AA sequence Show only first row Show all	>Lus10015458 pacid=23173594 polypeptide=Lus10015458 locus=Lus10015458.g ID=Lus10015458.BGIv1.0 annot-version=v1.0 MYAGFYGELPTSPLASRPRPPSLRLTFSVSGVRFPVGSSSTKGFSCCLTALLEVHKAMMGARPGDFMFCNLCGTMMVLSSADQVECPLCKSHKRGKGVFG QEISYTVSAEDIRRDLGISHFEGKMEVKDMEINKQCEKCSNTKLKFSTRQMRSADEGQTTFYHCSVCSHTFTEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25940			TFIIB zinc-binding protein (.1...		Lus10015458 [exp]	0	1
AT5G14290			Mitochondrial ribosomal protei...		Lus10041583 [exp]	1.0	0.9400
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10025933 [exp]	1.4	0.9346
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10036870 [exp]	3.2	0.9160
AT4G08240			unknown protein		Lus10009881 [exp]	3.5	0.9313
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10022210 [exp]	3.7	0.9020
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10039656 [exp]	4.0	0.9113
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Lus10015968 [exp]	4.2	0.9133
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10039583 [exp]	7.1	0.8910
AT3G52040			unknown protein		Lus10039586 [exp]	7.7	0.8937
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10041295 [exp]	7.7	0.9161

Compare expression of checked genes

Lus10015458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.