Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58970 454 / 4e-158 MRS2-4, MGT6 magnesium transporter 6 (.1) AT4G28580 308 / 2e-101 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1) AT5G64560 269 / 3e-86 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT5G09690 257 / 9e-82 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT1G16010 240 / 1e-74 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT1G80900 236 / 3e-73 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT2G03620 211 / 9e-64 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT3G19640 202 / 8e-60 MRS2-3, MGT4 magnesium transporter 4 (.1) AT5G09720 138 / 2e-37 Magnesium transporter CorA-like family protein (.1) AT5G09710 92 / 1e-20 Magnesium transporter CorA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001373 [exp] 549 / 0 AT3G58970 450 / 2e-158 magnesium transporter 6 (.1) Lus10021887 [exp] 266 / 6e-85 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2) Lus10024860 [exp] 258 / 4e-82 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10008803 [exp] 256 / 3e-81 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2) Lus10026063 [exp] 253 / 2e-79 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10014353 [exp] 249 / 6e-78 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10022218 [exp] 243 / 3e-74 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10037081 [exp] 197 / 4e-59 AT2G03620 479 / 6e-170 magnesium transporter 3 (.1.2) Lus10036901 [exp] 162 / 7e-46 AT2G03620 388 / 4e-134 magnesium transporter 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G081700 [exp] 505 / 4e-178 AT3G58970 538 / 0.0 magnesium transporter 6 (.1) Potri.010G077900 [exp] 261 / 4e-83 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.008G161400 [exp] 258 / 6e-82 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.001G043200 [exp] 246 / 6e-77 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.003G183600 [exp] 243 / 1e-75 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.007G098200 [exp] 208 / 2e-62 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.008G096200 [exp] 205 / 2e-61 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2) Potri.010G158100 [exp] 201 / 5e-60 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2) Potri.007G098000 [exp] 179 / 2e-51 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1) Potri.009G086300 [exp] 153 / 2e-41 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01544 [flax] [poplar] CorA CorA-like Mg2+ transporter protein
Representative CDS sequence Show only first row Show all	>Lus10015459 pacid=23173608 polypeptide=Lus10015459 locus=Lus10015459.g ID=Lus10015459.BGIv1.0 annot-version=v1.0 ATGGGGAAGGGAACCTTCTTTTCCTCCCTCAAGCGAAGTCGACGTCAGTCGAAGAAGAAGGCTGGGCCTCCGCTGCCGCAACCTCCACCTCCTCTGAGAG CTACCTCCCCTCCTCAGGCCGGGGAAAATGGTGCGGTGGCGGTGGGGAAGGGCAAGAAGAAGGCGGGAGGTGCCAGGCTCTGGATGAGGTTTGATCGATT TGGGAGTTCGGAGCTTGTGGAATGTGATAAAAGCGCCATTCTTAAGCGCGTGGCCATTCCTGCTAGGGATTTGAGGATCCTTGGCCCTGTCTTCTCTAAC TCCTCCAGTATTCTTGCCCGGGAGAAGGCCATGGTTGTCAATTTGGAGTTCATAAGAGCTATAGTGACTGCAGATGAAGTCTTGATTTTGGATCCTCTTA AACAGGAAGTTATTCAATTTGTGGATCAGCTACGGCTACAGCTTCATCCTAAACCGCCGTTACTGATTCAAGAAGCAAGCCATGAGGACAGACAAGGTAA CGAAAGCCGTGTTGCAGCTGATGCACACATGCCCCCTGTTCCAGAAGCTGCTGATGGTGTACAGTCAGAGCTTCCATTTGAGTTTCAGGTTCTTGAGATT GCATTGGAGGGTGTCTGTTCATATTTGGATTCTAGTGTGGCGGACTTGGAACGAGATGCTTATCCGATCTTGGATGAATTGGCTAGGAATGTCAGCACCA AGAATCTCGAACATGTGCGAAGTTTGAAAAGCAATCTGACTCGCCTCCTTGCACGTGTGCAAAAGGTGAGGGATGAGCTTGAACATCTATTAGATGATAA TGAAGATATGGGCGACTTATATTTGACACGGAAGTTGATCCAAAGTCAGCAATCTGAGGCCTTGTTAGGATCTTTTGCTTCAAACAGCATCACTCTTGCA GCTCAGATCCCTCAGCCGAGTTCTAATCGCAGCGGCAGTCTGGTGTCTGGCAGTGCTCTTGAAGAAGATGATGATGACATTGAAGATTTAGAGATGTTGC TTGAGGCCTACTTTATGCAACTGGATGGAACACGCAACAAAATATTGTCTGTCCGCGAGTACATTGATGACACAGAGGACTACGTCAACATCCAACTCGA CAACCAACGAAACGAACTGATTCAGCTCCAGTTGACATTGACGATAGCGTCATTCGCTATAGCAATGGAGACCTTGATAGCGTCCGTGTTCGGGATGAAT ATTCCATGCACGCTGTACGAAAGAGATGGGATATTCGGGTATGTCGTTGGAGCTGCTACAGTGGGATGTGTACTTGTTTTCTTGGTGGTTCTTGGATATG CAAGATGGAAGAAGCTGCTTGGTACTTGA
AA sequence Show only first row Show all	>Lus10015459 pacid=23173608 polypeptide=Lus10015459 locus=Lus10015459.g ID=Lus10015459.BGIv1.0 annot-version=v1.0 MGKGTFFSSLKRSRRQSKKKAGPPLPQPPPPLRATSPPQAGENGAVAVGKGKKKAGGARLWMRFDRFGSSELVECDKSAILKRVAIPARDLRILGPVFSN SSSILAREKAMVVNLEFIRAIVTADEVLILDPLKQEVIQFVDQLRLQLHPKPPLLIQEASHEDRQGNESRVAADAHMPPVPEAADGVQSELPFEFQVLEI ALEGVCSYLDSSVADLERDAYPILDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDELEHLLDDNEDMGDLYLTRKLIQSQQSEALLGSFASNSITLA AQIPQPSSNRSGSLVSGSALEEDDDDIEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLTLTIASFAIAMETLIASVFGMN IPCTLYERDGIFGYVVGAATVGCVLVFLVVLGYARWKKLLGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Lus10015459 [exp]	0	1
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	6.9	0.8526
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	9.6	0.8340
AT1G04780			Ankyrin repeat family protein ...		Lus10011743 [exp]	10.4	0.8264
AT1G12390			Cornichon family protein (.1)		Lus10028906 [exp]	12.2	0.7930
AT5G18610			Protein kinase superfamily pro...		Lus10041426 [exp]	12.7	0.8152
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10009361 [exp]	13.0	0.7622
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10019944 [exp]	13.2	0.8296
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10001819 [exp]	15.0	0.8201
AT5G39785			Protein of unknown function (D...		Lus10015368 [exp]	17.7	0.7983
AT5G17680			disease resistance protein (TI...		Lus10019708 [exp]	17.7	0.8063

Compare expression of checked genes

Lus10015459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.