Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61010 910 / 0 CPSF73-I cleavage and polyadenylation specificity factor 73-I (.1.2.3) AT2G01730 221 / 2e-64 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) AT5G23880 121 / 9e-29 ATCPSF100, EMB1265, ESP5, CPSF100 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001372 [exp] 449 / 5e-157 AT1G61010 424 / 1e-145 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Lus10037338 [exp] 233 / 8e-70 AT2G01730 732 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10035763 [exp] 234 / 1e-69 AT2G01730 755 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10021705 [exp] 107 / 3e-24 AT5G23880 1202 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Lus10035061 [exp] 107 / 5e-24 AT5G23880 1182 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Lus10001371 [exp] 72 / 2e-14 AT1G61010 206 / 5e-68 cleavage and polyadenylation specificity factor 73-I (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G076132 [exp] 952 / 0 AT1G61010 1237 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.017G076000 [exp] 951 / 0 AT1G61010 1236 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.017G076300 [exp] 940 / 0 AT1G61010 1093 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.010G106200 [exp] 227 / 6e-66 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Potri.001G231800 [exp] 128 / 7e-31 AT5G23880 1172 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11718 [flax] [poplar] CPSF73-100_C Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term CL0398 [flax] [poplar] RMMBL_DRMBL PF07521 [flax] [poplar] RMMBL Zn-dependent metallo-hydrolase RNA specificity domain CL0023 [flax] [poplar] P-loop_NTPase PF10996 [flax] [poplar] Beta-Casp Beta-Casp domain
Representative CDS sequence Show only first row Show all	>Lus10015460 pacid=23173658 polypeptide=Lus10015460 locus=Lus10015460.g ID=Lus10015460.BGIv1.0 annot-version=v1.0 ATGAGAATGATCTTAATTCCCTATTTTCTTCAGAACAAGAATGACCAGAAGAACGACCACTACTGTACTCACAATGGCAGGGATGAAGGAGAGCCAGAAG TTATTGACTACCATCAAACGAAGGAAGTGAACGGCATTAAGTTTTGGTGCTACACCGCTGGTCATGTTCTCGGCGCTGCCATGTTCATGGTCGACATTGC AGATGTTCGTGTGCTCTATACTGGAGACTACTCTCGTGAGGAAGATAGGCATCTTCAAGCTGCTGAAATGCCAGAGTTCTCCCCTGATATATGCATAATT GAGTCCACCTATGGTGTCCAGCTTCATCAGCCTCGGCACATCAGGGAGAAACGCTTCACCGATGTTATCCACTCAACTGTTTCTCAAGGGGGGCATGTCC TAATCCCTGCATTTGCCCTCGGTCGTGCCCAAGAACTTCTACTAATTCTCGACGAGTATTGGGCGAACCACAAGGAGCTCCACAACATCCCTATATATTA TGCTTCCCAGCTTGCCAAAAAGTGTATGACTGTTTATCAGACATACATACTTTCCATGAATGAGAGGATCCGGAATCAGTTTGCAACCTCAAACCCCTTC CAATTTAAGCACATACAAGCCTTGAACAGCACAGAAGCTCTTACTGAAGCTGGGCCGTGTGTGGTTATGGCTAGCCCTGGTGGACTACAGAGCGGCTTGT CTAGACAGTTGTTTGATATGTGGTGTGCCGATAAGAAGAATTCATGTGTCATACCTGGGTATGTTGTTGAAGGAACACTTGCTAAGACCATTATCAACGA ACCGAAGGAAGTCACTCTCATGAATGGCCTAGCTGCTCCACTCAATATGTCAGTTCACTACATTTCTTTCTCTGCCCATGCAGACTATGCTCAGACAAGT ACTTTCTTGAAAGAGCTCAGCCCTCCAAACATCATCCTAGTACATGGAGAAGCCATTGAGATGGGAAGGCTGAAACAGAAGCTTACCACAGAGATTGCTG ATGGCAATACCAAAATCATAACCCCAAAGAACTGCCAGTCAGTTGAGATGCTTTTCAACTCCGAGAAAATGGCTAAAACGGTAGGCAAACTGGCTGAGAA GACCCCTGAAGTCGGGGACACTGTTAGTGGGACACTGGTCAAGAAAGGGTTCACATATCAAATCATGGCACCTGAAGATCTACATGTATTCTCACAGCTC TCGACAGCGCATATCACCCAGAGAATTACCATCCCTTTCGGTGGGGCCTTCGGCGTGATAAAGAACCGTCTTGAGCAGATATACGAGAGCGTGGAATCTG GAACGGACGAGGAGTCTGGTGTTGCTACGTTACTAGTGCACAAGCTAGTGACGGTTAAACAGGACTCTGAGAAACACATTTCTGTTCATTGGAGTGCTGA TCCTGTTAGTGACATGGTGTCCGACTCGGCGGTGGCCTTGGTTCTGAATATCACCCGCGAACTCCCGAAGGTGGTGGTGGAGTCAGACGCGATGAAGTCG GAGGAGGAGAACGAGAAGAAAGCGGAGAAGGTGGTGTCTGCTCTGCTTGTTTCGCTTTTCGGAGATGTGAAGGTAGGAGAGAACGGGAAGCTGGTGATAA GCGTTGATGGGAATGTAGCACAACTCGATAAGCAGAGTGGGGATGTTGAGGGTGAGCATGAAGGTTTGAAAGAAAGAGTAAGGACTGCTTTTCGACGAAT CCAGAGTCCACAACATCAAATGTAA
AA sequence Show only first row Show all	>Lus10015460 pacid=23173658 polypeptide=Lus10015460 locus=Lus10015460.g ID=Lus10015460.BGIv1.0 annot-version=v1.0 MRMILIPYFLQNKNDQKNDHYCTHNGRDEGEPEVIDYHQTKEVNGIKFWCYTAGHVLGAAMFMVDIADVRVLYTGDYSREEDRHLQAAEMPEFSPDICII ESTYGVQLHQPRHIREKRFTDVIHSTVSQGGHVLIPAFALGRAQELLLILDEYWANHKELHNIPIYYASQLAKKCMTVYQTYILSMNERIRNQFATSNPF QFKHIQALNSTEALTEAGPCVVMASPGGLQSGLSRQLFDMWCADKKNSCVIPGYVVEGTLAKTIINEPKEVTLMNGLAAPLNMSVHYISFSAHADYAQTS TFLKELSPPNIILVHGEAIEMGRLKQKLTTEIADGNTKIITPKNCQSVEMLFNSEKMAKTVGKLAEKTPEVGDTVSGTLVKKGFTYQIMAPEDLHVFSQL STAHITQRITIPFGGAFGVIKNRLEQIYESVESGTDEESGVATLLVHKLVTVKQDSEKHISVHWSADPVSDMVSDSAVALVLNITRELPKVVVESDAMKS EEENEKKAEKVVSALLVSLFGDVKVGENGKLVISVDGNVAQLDKQSGDVEGEHEGLKERVRTAFRRIQSPQHQM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10015460 [exp]	0	1
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10008792 [exp]	2.6	0.8528
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028199 [exp]	7.3	0.8193
AT4G03220			Protein with RNI-like/FBD-like...		Lus10006970 [exp]	20.4	0.7998
AT5G22100			RNA cyclase family protein (.1...		Lus10004092 [exp]	20.5	0.8015
AT5G07940			unknown protein		Lus10034693 [exp]	21.4	0.7835
AT2G23140			RING/U-box superfamily protein...		Lus10022919 [exp]	23.7	0.7960
					Lus10033824 [exp]	26.8	0.7664
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006011 [exp]	27.7	0.7949
AT1G71350			eukaryotic translation initiat...		Lus10034314 [exp]	30.4	0.7759
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10032172 [exp]	31.8	0.7852

Compare expression of checked genes

Lus10015460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.