Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60950 105 / 1e-29 FED A, ATFD2, FEDA FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) AT1G10960 85 / 2e-21 ATFD1 ferredoxin 1 (.1) AT2G27510 78 / 8e-19 ATFD3 ferredoxin 3 (.1) AT1G32550 57 / 8e-11 FdC1 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2) AT5G10000 53 / 2e-09 ATFD4 ferredoxin 4 (.1) AT4G14890 39 / 0.0004 FdC2 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001369 [exp] 169 / 1e-54 AT1G60950 186 / 1e-61 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10020616 [exp] 84 / 4e-21 AT2G27510 172 / 9e-56 ferredoxin 3 (.1) Lus10004870 [exp] 81 / 7e-20 AT2G27510 165 / 5e-53 ferredoxin 3 (.1) Lus10043430 [exp] 77 / 2e-18 AT2G27510 179 / 3e-58 ferredoxin 3 (.1) Lus10034144 [exp] 76 / 8e-18 AT2G27510 179 / 1e-58 ferredoxin 3 (.1) Lus10000483 [exp] 49 / 1e-07 AT1G32550 245 / 7e-84 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2) Lus10004576 [exp] 49 / 2e-07 AT1G32550 248 / 6e-85 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2) Lus10006116 [exp] 45 / 4e-06 AT4G14890 186 / 1e-61 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10010557 [exp] 44 / 9e-06 AT4G14890 188 / 5e-61 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G218400 [exp] 104 / 2e-29 AT1G60950 194 / 9e-65 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.003G015200 [exp] 100 / 9e-28 AT1G60950 176 / 2e-57 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.001G470700 [exp] 94 / 4e-25 AT1G60950 174 / 7e-57 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.009G163800 [exp] 84 / 2e-21 AT2G27510 167 / 7e-54 ferredoxin 3 (.1) Potri.010G239100 [exp] 79 / 4e-19 AT2G27510 175 / 7e-57 ferredoxin 3 (.1) Potri.004G202500 [exp] 78 / 2e-18 AT2G27510 164 / 3e-52 ferredoxin 3 (.1) Potri.008G020100 [exp] 77 / 2e-18 AT2G27510 180 / 5e-59 ferredoxin 3 (.1) Potri.003G090400 [exp] 53 / 3e-09 AT1G32550 257 / 3e-88 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2) Potri.010G087300 [exp] 39 / 0.0003 AT4G14890 189 / 7e-63 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.008G153200 [exp] 39 / 0.0003 AT4G14890 193 / 2e-64 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10015462 pacid=23173623 polypeptide=Lus10015462 locus=Lus10015462.g ID=Lus10015462.BGIv1.0 annot-version=v1.0 ATGGCGGCAACAGCAGCAGTAAGCAGCAGCCCGATGGTGAGCGCCAAGTTCACAAGGCCTAACCCATCATCATCATCATCGTCCTTAAAGGCACTCATCC CTACTACCAACTTCAGCTTCGGCGGCCTCAAATCATCATCATCCTTCGGAGGGCGCGGACTAAGCGTGGTGGCGAATTACAAGGTTACACTCAAGACCCC TGAAGGAGAAGTGAGCTTCGACTGCCCAGACGACGTCTACATTCTTGACCAAGCCGAGGAGGAAGGCATTGACTTGCCTTACTCTTGCAGGGCTGGCTCC TGCTCCTCCTGCGCCGGCAAAGTCGTCGCCGGTTCACTTGACCAGTCTGACCAGAGCTTCCTCGACGACGAACAGCTCGCTGAAGGTTGGGCCTTGACCT GCGTCGCCTACCCTTCTTCCGATGTCACCATTGAGACCCACAAGGAGGAAGAGCTCACCGCCTAA
AA sequence Show only first row Show all	>Lus10015462 pacid=23173623 polypeptide=Lus10015462 locus=Lus10015462.g ID=Lus10015462.BGIv1.0 annot-version=v1.0 MAATAAVSSSPMVSAKFTRPNPSSSSSSLKALIPTTNFSFGGLKSSSSFGGRGLSVVANYKVTLKTPEGEVSFDCPDDVYILDQAEEEGIDLPYSCRAGS CSSCAGKVVAGSLDQSDQSFLDDEQLAEGWALTCVAYPSSDVTIETHKEEELTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10015462 [exp]	0	1
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10001369 [exp]	1.0	0.9822
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Lus10037912 [exp]	2.0	0.9574
AT3G61870			unknown protein		Lus10012617 [exp]	2.4	0.9565
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001634 [exp]	2.8	0.9491
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Lus10038638 [exp]	5.5	0.9379
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10012892 [exp]	6.0	0.9306
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10025007 [exp]	7.5	0.9439
AT1G54500			Rubredoxin-like superfamily pr...		Lus10019005 [exp]	7.7	0.9440
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10028806 [exp]	8.1	0.9454
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10016074 [exp]	8.4	0.9439

Compare expression of checked genes

Lus10015462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.