Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10950 787 / 0 AtTMN1 transmembrane nine 1 (.1) AT1G14670 321 / 9e-103 Endomembrane protein 70 protein family (.1) AT2G01970 320 / 3e-102 Endomembrane protein 70 protein family (.1) AT5G37310 308 / 8e-98 Endomembrane protein 70 protein family (.1) AT1G08350 255 / 2e-77 Endomembrane protein 70 protein family (.1.2) AT2G24170 220 / 6e-64 Endomembrane protein 70 protein family (.1) AT5G25100 213 / 4e-61 Endomembrane protein 70 protein family (.1.2) AT3G13772 212 / 5e-61 AtTMN7 transmembrane nine 7 (.1) AT5G10840 211 / 2e-60 Endomembrane protein 70 protein family (.1) AT1G55130 201 / 4e-57 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001368 [exp] 868 / 0 AT1G10950 990 / 0.0 transmembrane nine 1 (.1) Lus10001291 [exp] 832 / 0 AT1G10950 1000 / 0.0 transmembrane nine 1 (.1) Lus10012697 [exp] 778 / 0 AT1G10950 947 / 0.0 transmembrane nine 1 (.1) Lus10042286 [exp] 318 / 1e-101 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031876 [exp] 318 / 2e-101 AT2G01970 1059 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031308 [exp] 318 / 3e-101 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026371 [exp] 251 / 2e-74 AT2G01970 912 / 0.0 Endomembrane protein 70 protein family (.1) Lus10004873 [exp] 227 / 9e-67 AT1G08350 668 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10000222 [exp] 221 / 5e-64 AT5G10840 1071 / 0.0 Endomembrane protein 70 protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G218300 [exp] 787 / 0 AT1G10950 920 / 0.0 transmembrane nine 1 (.1) Potri.003G015300 [exp] 787 / 0 AT1G10950 897 / 0.0 transmembrane nine 1 (.1) Potri.017G144181 [exp] 314 / 4e-100 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144241 [exp] 309 / 6e-98 AT5G37310 989 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G075450 [exp] 302 / 2e-95 AT5G37310 953 / 0.0 Endomembrane protein 70 protein family (.1) Potri.012G042300 [exp] 259 / 4e-79 AT1G14670 762 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G203200 [exp] 238 / 7e-71 AT1G08350 671 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.006G184200 [exp] 213 / 5e-61 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G018400 [exp] 212 / 5e-61 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G106600 [exp] 212 / 8e-61 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10015463 pacid=23173629 polypeptide=Lus10015463 locus=Lus10015463.g ID=Lus10015463.BGIv1.0 annot-version=v1.0 ATGTCCTCCGCCGCTTCAACCCGATCTCTCCATCTCTTCTTCTGCGCTCTCCTTCTCATTTCTCCTCTCATTCTCGCCTCCGAGTCTGACCACAAGTATC AACCAGATGATCCTGTTACTCTTTGGGTAAACAAAGTCGGCCCGTATAATAACCCACAAGAAACATACAACTATTTCAGCCTTCCGTTTTGCCGTCCAGC TGGAAATTCTGCTCACAAATGGGGTGGCCTTGGTGAAGTCCTGGGTGGAAACGAACTTATTGATAGTTTGCTGGACATCAAGTTCCAGAAGAATGTCGAA AAAGCTTTGATTTGTCAGCTTGAACTTGATGAAGCCAAGGTCAGACAGTTCAAAGATGCAATTGAGAACAGTTATTGGTTTGAGTTCTTCATGGATGACT TGCCATTATGGGGATTTGTTGGGGAGTTGCATCCTGATAAAAACAGTGAGAATGGCAAGCATGTCCTATACACGCATAAGACCATTACAGTTAAATATAA TAAAAATCAGATCATTCATGTCAATCTTACTCAAGAGAGTGCTAAACCACTTGAAGCTGGGAAAAGCTTGGAAATGACCTACTCTGTCAAATGGATTGCA ACTAATGTTTCTTTTGCTCGTCGCTTTGATGTCTACTTGGATTACCCTTTCTTTGAGCATCAGATTCATTGGTTCTCCATTTTCAATTCTTTCATGATGG TCATCTTTCTCACTGGTTTGGTCTCAATGATATTGATGCGTACTCTGAGAAATGACTATGCGAAGTATGCTCGGGAAGATGATGATCTGGAGTCCTTGGA AAGAGATGTTAGTGAAGAGTCTGGTTGGAAACTTGTCCATGGAGATGTTTTCCGTCCACCTCGCAGTTTGGTTATTCTATCAGCTGTTGTTGGGACTGGT GCCCAGCTGGCGTTGCTTGTGCTTCTGGTCATCTTATTGGCAATCATTGGGATGTTGTATGTTGGGAGAGGAGCAATTGTGACAACTTTCATTGTATGCT ATGCTCTTACTTCATTCATCTCTGGTTATGTTAGCGGAGGGATGTATTCCCGTCATGGGGGTAAAAGTTGGATAAAATCGATGATCCTCACAGCATCATT GTTCCCATTCATGTGCTTTGGGATTGGAAATTGGAGTGGTGCTCCAAACAACCCTTGCCGTGTGAAGACCATTCCTCGCCCAATTCCTGAGAAGAAATGG TACCTTACTCCATCAGTTGTATCAATGATGGGTGGGCTACTTCCCTTTGGCAGCATATTCATTGAGATGTACTTTGTCTTCACCTCATTTTGGAATTACA AGGTGTACTATGTTTATGGGTTCATGCTGCTTGTTTTCCTGATTCTCATCATTGTAACCGTTTGTGTGACGATTGTGGGAACGTATTTCTTGCTGAATGC TGAGAACTACCACTGGCAATGGACCTCGTTCTTCTCTGCTGCATCAACAGCTGTGTATGTGTACTTGTACTCAATATACTACTACTATGTGAAGACAAAG ATGTCAGGCTTCTTCCAGACCAGCTTCTACTTTGGATACACTTTGATGTTCTGCCTTGGGCTGGGGATACTATGTGGAGCTGTTGGTTATCTAGGATCAA ACTTGTTTGTTAGGAGAATCTACAGAAACATCAAGTGTGACTAA
AA sequence Show only first row Show all	>Lus10015463 pacid=23173629 polypeptide=Lus10015463 locus=Lus10015463.g ID=Lus10015463.BGIv1.0 annot-version=v1.0 MSSAASTRSLHLFFCALLLISPLILASESDHKYQPDDPVTLWVNKVGPYNNPQETYNYFSLPFCRPAGNSAHKWGGLGEVLGGNELIDSLLDIKFQKNVE KALICQLELDEAKVRQFKDAIENSYWFEFFMDDLPLWGFVGELHPDKNSENGKHVLYTHKTITVKYNKNQIIHVNLTQESAKPLEAGKSLEMTYSVKWIA TNVSFARRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLESLERDVSEESGWKLVHGDVFRPPRSLVILSAVVGTG AQLALLVLLVILLAIIGMLYVGRGAIVTTFIVCYALTSFISGYVSGGMYSRHGGKSWIKSMILTASLFPFMCFGIGNWSGAPNNPCRVKTIPRPIPEKKW YLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFLILIIVTVCVTIVGTYFLLNAENYHWQWTSFFSAASTAVYVYLYSIYYYYVKTK MSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10015463 [exp]	0	1
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10014599 [exp]	1.7	0.9237
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10023580 [exp]	3.2	0.9298
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10015105 [exp]	3.6	0.9310
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10031398 [exp]	4.2	0.8918
AT5G45160			Root hair defective 3 GTP-bind...		Lus10018282 [exp]	4.9	0.9028
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10038806 [exp]	8.5	0.8668
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022767 [exp]	9.5	0.8722
AT1G31780			unknown protein		Lus10035691 [exp]	9.8	0.8615
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10019414 [exp]	10.7	0.8647
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10019170 [exp]	11.2	0.8639

Compare expression of checked genes

Lus10015463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.