Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22940 711 / 0 THIE, TH-1, TH1 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001365 [exp] 967 / 0 AT1G22940 720 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1) Lus10028527 [exp] 44 / 0.0002 AT5G37850 464 / 8e-166 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10009119 [exp] 43 / 0.0005 AT5G37850 531 / 0.0 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G015700 [exp] 748 / 0 AT1G22940 710 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF08543 [flax] [poplar] Phos_pyr_kin Phosphomethylpyrimidine kinase CL0036 [flax] [poplar] TIM_barrel PF02581 [flax] [poplar] TMP-TENI Thiamine monophosphate synthase
Representative CDS sequence Show only first row Show all	>Lus10015466 pacid=23173593 polypeptide=Lus10015466 locus=Lus10015466.g ID=Lus10015466.BGIv1.0 annot-version=v1.0 ATGTCCATGGGAGAAAATGGCGCCTTATCGCAGGGAATTGGTTCATCAATTGAGAAAACACCTCACGTGTTGACTGTTGCTGGCTCTGATTCTGGCGCCG GAGCTGGAATTCAAGCTGACCTTAAGACTTGCGCTGCTCGTGGAGTGTATTGTTCCACAGTGATCACTGCTGTCACTGCGCAGAACACTGCTGGTGTTCA GGGAATAAACATTGTGCCTGAGGAATTTGTTTTTCAGCAGCTGAAGTCTGTGCTCTCTGACATGGAAGTTGATGTGGTGAAAACAGGAATGTTACCCTCT ATTGAGATTGTTAAAGTTCTTCAGCAAAGCCTTAAGGAGTTTCCAGTTCGAGCTGTAGTTGTCGATCCTGTTATGGTATCTACAAGTGGAGATGTGCTTG CAGATCCTTCTGTTCTATCCAGGTTTCGAGAGGAGCTTCTTATGATGGCTGACATTGTAACCCCTAATATCAAAGAGGCGTCTACTTTACTTGGTGGAAT GCGAATAGAAACAGTTGCTGACATGCGATCCGCGGCTAAGCTGTTACACGATATGGGTCCACGGAATGTGCTTGTCAAAGGTGGTGACCTCCCTGAATCT TTTGATGCTATCGATGTTTTCTTTGATGGCGCAGAGTATCATGAGCTACAATCGCCTCGCGTTAAAACTCGCAACACCCATGGCACCGGTTGTACTTTGG CGTCGTGCATAGCTGCTGAGCTTGCAAAAGGAGCCTCAATGCTCTCTGCTATAAAGTTTGCCAAGCGCTATGTAGAGACTGTATTGGAGTACGGTAAAGA CATCCGCATAGGAAATGGAGCGCAGGGTCCTTTTGACCACTTTTTAAGGCTCAAGAATAACTCTAGTAAACACAAAGCCTTTAATGGGAATGAGTTATTT CTGTATGCTGTCACGGACTCTGTGATGAATGAGAAATGGGGACGACCAATGGAGGTTGCAGTTAAGGAAGCAATTGAAGGAGGAGCCACAATAATTCAAC TAAGGGAGAAGGATACTGAAACAAGAGAGTTTATTGAAACAGCTAAAGCTTGTCTCAAAATCTGCCGTTCCTGCAAAGTGCCTCTATTGATCAATGACCG TATTGATGTAGCCCTTGCATCTGATGCCGATGGGGTGCATGTTGGCCAGTCAGATATGCCTGTTCGTGTTGCCCGCGCACTTCTTGGCCCCGAGAAGATA ATTGGCGTATCATGCAAGACGGTGGAGCAATCTCATCAAGCATGGCTTGATGGTGCAGACTACATTGGCTGTGGTGGAGTCTATCCAACTAGCACAAAGG CAAACAACACCACTGTCGGCTTGGAAGGGCTAACAACTGTTTGCTTGGCCTCAAAGCTACCCGTGGTTGCGATTGGTGGAATCAATGCTTCAAACGCGGG AACTGTGATGAGGATCGGTGCGCCAAGTTTAAAAGGTGTTGCGGTGGTTTCAGCTCTCTTTGATAGGAAGAGTGTCGCAGAAGAAACAAGGAAGTTGCAT AGTTTGCTGGTGGATGCATAG
AA sequence Show only first row Show all	>Lus10015466 pacid=23173593 polypeptide=Lus10015466 locus=Lus10015466.g ID=Lus10015466.BGIv1.0 annot-version=v1.0 MSMGENGALSQGIGSSIEKTPHVLTVAGSDSGAGAGIQADLKTCAARGVYCSTVITAVTAQNTAGVQGINIVPEEFVFQQLKSVLSDMEVDVVKTGMLPS IEIVKVLQQSLKEFPVRAVVVDPVMVSTSGDVLADPSVLSRFREELLMMADIVTPNIKEASTLLGGMRIETVADMRSAAKLLHDMGPRNVLVKGGDLPES FDAIDVFFDGAEYHELQSPRVKTRNTHGTGCTLASCIAAELAKGASMLSAIKFAKRYVETVLEYGKDIRIGNGAQGPFDHFLRLKNNSSKHKAFNGNELF LYAVTDSVMNEKWGRPMEVAVKEAIEGGATIIQLREKDTETREFIETAKACLKICRSCKVPLLINDRIDVALASDADGVHVGQSDMPVRVARALLGPEKI IGVSCKTVEQSHQAWLDGADYIGCGGVYPTSTKANNTTVGLEGLTTVCLASKLPVVAIGGINASNAGTVMRIGAPSLKGVAVVSALFDRKSVAEETRKLH SLLVDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	0	1
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10021701 [exp]	1.4	0.9295
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	2.4	0.9239
AT1G73350			unknown protein		Lus10042294 [exp]	3.0	0.9190
AT3G09250			Nuclear transport factor 2 (NT...		Lus10021504 [exp]	3.5	0.9157
AT3G28760			unknown protein		Lus10005250 [exp]	4.2	0.9049
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	4.5	0.9096
AT3G14150			Aldolase-type TIM barrel famil...		Lus10013174 [exp]	4.7	0.8808
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10035604 [exp]	4.9	0.8919
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	5.3	0.9009
					Lus10031452 [exp]	7.2	0.8748

Compare expression of checked genes

Lus10015466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.