Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10930 1231 / 0 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT1G60930 1130 / 0 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT3G05740 374 / 5e-115 RECQI1 RECQ helicase l1 (.1) AT1G31360 376 / 7e-115 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT4G35740 312 / 2e-91 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT1G27880 202 / 4e-53 DEAD/DEAH box RNA helicase family protein (.1) AT5G27680 146 / 2e-35 RECQSIM RECQ helicase SIM (.1) AT2G33730 79 / 2e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01540 63 / 9e-10 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G22330 61 / 4e-09 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042451 [exp] 370 / 3e-113 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10026219 [exp] 368 / 2e-112 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10033289 [exp] 347 / 3e-103 AT1G31360 949 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10034749 [exp] 317 / 4e-93 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10041840 [exp] 284 / 1e-80 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10034434 [exp] 249 / 2e-68 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10028387 [exp] 216 / 8e-59 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10001364 [exp] 156 / 6e-44 AT3G61370 74 / 5e-18 Protein of unknown function (DUF3245) (.1) Lus10027936 [exp] 134 / 8e-35 AT3G61370 67 / 4e-14 Protein of unknown function (DUF3245) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G015800 [exp] 1500 / 0 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.005G019800 [exp] 392 / 8e-122 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.003G104300 [exp] 382 / 1e-116 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.005G107400 [exp] 302 / 1e-87 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.013G161200 [exp] 267 / 2e-74 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.010G056500 [exp] 185 / 2e-47 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G026400 [exp] 130 / 3e-30 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.016G069200 [exp] 79 / 8e-17 AT3G61370 84 / 9e-22 Protein of unknown function (DUF3245) (.1) Potri.015G037200 [exp] 76 / 9e-14 AT2G33730 1058 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G045800 [exp] 76 / 1e-13 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0426 [flax] [poplar] HRDC-like PF00570 [flax] [poplar] HRDC HRDC domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0123 [flax] [poplar] HTH PF09382 [flax] [poplar] RQC RQC domain CL0123 [flax] [poplar] PF11595 [flax] [poplar] DUF3245 Protein of unknown function (DUF3245) CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10015467 pacid=23173692 polypeptide=Lus10015467 locus=Lus10015467.g ID=Lus10015467.BGIv1.0 annot-version=v1.0 ATGAACGCTGCAACTGGAGAGCGTACCTTGTTGACGACGCAGGAATTGAAGATCAGTCCAGATACGGCCATGGATACAGAGAAGATAGCTGCTGCAGTAG AATCTCCGGCGTGGATCGGGTTTTCCAACCGGTTATGTACAAGCTGTTTAAGCAATTCAGGCGAAGAATTGAGATGTAATGAGAAGAAGCTGCCTAAAGT GAATTGGTCCCAACATGCAAAGGCATACGATAAGTCATCATCAGTGCAGAAGGAAAATTTGAGCTCGAATTTCCTGTATTCTCTAGAATCTCAGAAACCT CGTGTTGAAGTAGAAATGGCGAGAAGGTTAGCCTCTTGTCAAGTTCAGAGTTTCCAGAGACAGCTGAATCCACAAGTTGAAAAGGCTTGGCTTTCTCTTT CCAATCTTCATATATCTACCAGAAGCTATTGTAGACCTGGGAAAACGGGAGCAATTAAGAATGTGCAAGCTAGTAAGGGACGTGCTCCCGTTGTACAGAG CTCATCTAATGTACGTAAATATGGTGAAGGTGTGGTTTCCAAACAGACCTTTCATAAACCCGATGTTCAGAATGGTGACACTACAGAGCATACAAGATCG TGCAATGAAGAAATGGGGAAAGGTGGGAACAAGGTGTCGTGGGCCAGTCAAACCATGCCTTCAGCTTCCTCTGGTCCCTTAGGCTATCAGAGTACGACTG CACAAGAGTTAGCAGAAGGGTCAGCTGATTATATGGATGACGAGGAATTAATCCAGAGCATTGATCTCGATCAGATAGTTATGGATCATTACCAGTCTAC TTGCACACCTCAACCTTCAGTTTCTAAGTTTCAACCAATAACTCCCTCCGTGAATAAGGCTAACTTCAGTGGGCCTGAAGATACATTTCTACCATCTGAG TTATCCTCAAAGTGCAGCCATGGAATTCAGCTAGGGTTTTGTCCACAAGCAACGGTTCATATGCAGGAGATAAAGGACAAATTACTCAGCATATCTAACG AATTACTTGATAATGCTAACCTTCATCCAGTAGAGATGGAGAAGCTTCGCCAAGATAGGTTGCATCTTAATAAACAGCTCCAGCAACTTGAGGGGCATAT TAGTAATCAAGAGAGGCACAAATCAAACTTTTCCACATCCACTACAACTTGCAATGCTCAATATGAAACACCTCAGATGTCAGCTTTCAGAATGGAGCCA AATCACTATCTTCAAAATGAATCCGGTGCAAGAGGGTATGAAAATTGGAACTCATCATCACTTCCATTCACTCCCATGGATGGATTTGGTGGTTCATATA CTCCTGTGGTGAGGGAACCTTACATACCAAAGTTTGTTGAGGTGAATTACTCAGACGGCTCAAATGACCCACAGTGGAGCTCCACAAATTTCCAGTGGAC AAAAAGCCTGGAGGAAAACAACAAGAAAGTGTTTGGAAATCATTCTTTTCGTCCCAATCAAAGAGAAGTCATTAATGCCACAATGAGCGGGTATGATGTC TTTGTTCTAATGCCTACAGGTGGTGGAAAGAGTCTGACATATCAGCTACCTGCTTTAGTTTGTCCCGGGATAACATTGGTAATATCTCCACTGGTATCAC TTATTCAAGATCAGATAATGCATCTTTTGCAGGCAAATATACCTGCTGCTTATTTGAGTGCAAATATGGAATGGTCTGAACAGCAGGAGATAATGAATGA ACTTTGCTCCGACTATTGTAGATACAAGCTGTTATATGTTACACCAGAAAAAGTTGCAAAGAGCGATGCTCTTTTGCGAAATTTGGAGAGCTTAAATGCT CGTGGAATGCTTGCCAGAATTGTAATTGACGAAGCTCATTGCGTGAGTCAGTGGGGACATGATTTTAGACCAGATTACAAGGAACTTGGAATCCTGAAAA AGAAATTTGTGAAAACCCCAGTTTTGGCTTTAACTGCTACCGCAACAGCTAGCGTGAAAGAAGATGTTGTGCAAGCTCTTGGACTTGTTGATTGCATTAT TTTTCGGCAGAGTTTTAATAGACCGAACCTGCAGTATATTGTGATTTCCAAGACAAAAAAGTGTTTGGATGACATGGACAACTTCATTAGGACGACCCAT TTTGATGAATGTGGAATTGTTTACTGTCTCTCAAGAATGGACTGTGAAAAAGTTGCTGAAAAGTTGCAGCAATATGGACATAAGACGGCATTTTATCATG GTAACATGGAGGCTTCTCAACGTGCTTTTGTCCAGAGCCAGTGGAGCAAAGATGAAGTTAATATAATTTGTGCCACAGTGGCATTTGGAATGGGTATCAA CAAACCTGATGTTCGCTTTGTGATTCATCATTCTCTCCCAAAATCCATTGAAGGTTACCATCAGGAATGTGGTCGTGCTGGCCGAGATGGTCAACCCTCA TCTTGTGTGCTATACTACAGCTACAGTGACTATATAAGGGTAAAGCATATGCTGTCGCAAGGACAGGCAGAGCAAAGTCCATGGACATCCGGGTATCGAG CTAGCACAGTACAGCCAGATCGAATATATGAGAAAAATACTGAAAACCTCCTTCGAATGGTAAGCTATTGTGAAAATGATGTTGATTGTAGACGTTTCCT ACAACTTGTGCATTTTGGAGAGAAGTTTAGCTCTGGAAACTGCAAGAAAACTTGTGATAACTGCAAAACTACTAAAAGCTTAGTGGAGAAGGATGTCACC CAGATTGCAAAAGAATTGGTCGAGCTGGTAAAATTGGCAGGACAAAAATATTCGGCTTCCCATATTTTGGAAGTCTACAGGGGATCCATGAGCCAATTGG TAAAGAAACATAGACATGAGACCTTGAGTCTTCATGGAGCCGGAAAACATCTGGCAAAAGAAGAGGCGTCTCGTGTATTGCGTCATCTTGTCATTGAGGA GTACCTTGTGGAGGAAGTTAAGAAAAGTGAGGTCTACGGTTCTGTTTCATCAGTGTTAAAGGTGAATCAACGCAAAGCATCAAATCTGTATTCTGGAAAG CAGATAATGCTGAGGTTCCTTTCCTCCGCAAAAGCGTCTAGACCCTGCAAATCTGATGCAACTCCTGCAAAAGGAGCACTGCTGCCTAATAAGCACAGTC CTCCGCCGGCTGACACTCCAGCATCGACTCGACCTGAAATCAACTTGGATCTTAGTGCAAAGTTATATAATGCTTTACGACTGCTTCGAACCGCGATTCT TAAAGAAGGCAATCAAGATTTGGGTGCGCACCATATATTTGCGAATGCTACACTACAAAACATAAGCAAAAGGATTCCGAGAACAAAGGAAGAACTGCTG GAGGTTAACGGAATTGGAAAAGCAAAGTTGGCAAAGTATGGAGATCGGGTACTGGAGACCATTGAAGCCACAATCCGAAAATACTACAAAAATGGGGCAA GTGGAAGCAGCAGCAACGACAGCAGCAGCGAAAAGGCAAAGAGGAGGCGAAACGGTGCTGCTGCAAATGGCGGTGGAGGGGATGATCGGGAGGAGGAGGA TGACGAGTTTGTGAAAAGCACAGGTCGGCCTGTGAAGAAGAGGCTTGCTAAGAAGCTACATGACAACAATGGTGTTAATGAGTTTGGTAATCTTGGACTA GAAGATTATGTGGAAGATATTCCGGATGATGATCTAGTTTTCTACGATTTGACTGGATTCCAATTCACTTGCCTTGCCTCAATTAGCAATTCGGCTGAAC AGTGGGTAAAGAACATGAGCAGAAGCACGGACGATGACCCAGCTGCGGCAGAAGAACAGGGTCGATCTCTAAAGCTTGGACTCGGTGCAAGAGTAGCTCC ACAATCCAACATTACACCTTCAAACGATCCGGCAGCACGGAGACTGCACAAGAAGTTGGAAGCTGGGAAGAAAAGAGCTTCCAATGTTGCTAATGAGACC GGAGGACCTAGAGGTGACGAAAGTGATGACAGCGATGGAGAAATGGAAAGCAGAACCGGTGCATTTGCCAAGAAGAGAGCTAGACCCCCAGCTTTACCCT CACAGCTTAACACCAAGAAGAAGAAGAGGAACCACAAGTAA
AA sequence Show only first row Show all	>Lus10015467 pacid=23173692 polypeptide=Lus10015467 locus=Lus10015467.g ID=Lus10015467.BGIv1.0 annot-version=v1.0 MNAATGERTLLTTQELKISPDTAMDTEKIAAAVESPAWIGFSNRLCTSCLSNSGEELRCNEKKLPKVNWSQHAKAYDKSSSVQKENLSSNFLYSLESQKP RVEVEMARRLASCQVQSFQRQLNPQVEKAWLSLSNLHISTRSYCRPGKTGAIKNVQASKGRAPVVQSSSNVRKYGEGVVSKQTFHKPDVQNGDTTEHTRS CNEEMGKGGNKVSWASQTMPSASSGPLGYQSTTAQELAEGSADYMDDEELIQSIDLDQIVMDHYQSTCTPQPSVSKFQPITPSVNKANFSGPEDTFLPSE LSSKCSHGIQLGFCPQATVHMQEIKDKLLSISNELLDNANLHPVEMEKLRQDRLHLNKQLQQLEGHISNQERHKSNFSTSTTTCNAQYETPQMSAFRMEP NHYLQNESGARGYENWNSSSLPFTPMDGFGGSYTPVVREPYIPKFVEVNYSDGSNDPQWSSTNFQWTKSLEENNKKVFGNHSFRPNQREVINATMSGYDV FVLMPTGGGKSLTYQLPALVCPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWSEQQEIMNELCSDYCRYKLLYVTPEKVAKSDALLRNLESLNA RGMLARIVIDEAHCVSQWGHDFRPDYKELGILKKKFVKTPVLALTATATASVKEDVVQALGLVDCIIFRQSFNRPNLQYIVISKTKKCLDDMDNFIRTTH FDECGIVYCLSRMDCEKVAEKLQQYGHKTAFYHGNMEASQRAFVQSQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQPS SCVLYYSYSDYIRVKHMLSQGQAEQSPWTSGYRASTVQPDRIYEKNTENLLRMVSYCENDVDCRRFLQLVHFGEKFSSGNCKKTCDNCKTTKSLVEKDVT QIAKELVELVKLAGQKYSASHILEVYRGSMSQLVKKHRHETLSLHGAGKHLAKEEASRVLRHLVIEEYLVEEVKKSEVYGSVSSVLKVNQRKASNLYSGK QIMLRFLSSAKASRPCKSDATPAKGALLPNKHSPPPADTPASTRPEINLDLSAKLYNALRLLRTAILKEGNQDLGAHHIFANATLQNISKRIPRTKEELL EVNGIGKAKLAKYGDRVLETIEATIRKYYKNGASGSSSNDSSSEKAKRRRNGAAANGGGGDDREEEDDEFVKSTGRPVKKRLAKKLHDNNGVNEFGNLGL EDYVEDIPDDDLVFYDLTGFQFTCLASISNSAEQWVKNMSRSTDDDPAAAEEQGRSLKLGLGARVAPQSNITPSNDPAARRLHKKLEAGKKRASNVANET GGPRGDESDDSDGEMESRTGAFAKKRARPPALPSQLNTKKKKRNHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	0	1
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10035061 [exp]	2.4	0.9301
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10008728 [exp]	2.8	0.9174
AT1G79950			RAD3-like DNA-binding helicase...		Lus10037532 [exp]	3.2	0.8885
AT5G66960			Prolyl oligopeptidase family p...		Lus10017568 [exp]	3.7	0.8927
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10007337 [exp]	4.2	0.9170
AT3G46210			Ribosomal protein S5 domain 2-...		Lus10009221 [exp]	5.3	0.8845
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10008424 [exp]	6.2	0.8857
AT5G56900	C3HZnF		CwfJ-like family protein / zin...		Lus10021589 [exp]	6.9	0.9039
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	9.6	0.8727
AT1G21730			P-loop containing nucleoside t...		Lus10018145 [exp]	10.6	0.9155

Compare expression of checked genes

Lus10015467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.