Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22930 993 / 0 T-complex protein 11 (.1.2) AT4G09150 426 / 4e-130 T-complex protein 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001363 [exp] 2087 / 0 AT1G22930 1056 / 0.0 T-complex protein 11 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G018500 [exp] 1340 / 0 AT1G22930 993 / 0.0 T-complex protein 11 (.1.2) Potri.004G217800 [exp] 1311 / 0 AT1G22930 1040 / 0.0 T-complex protein 11 (.1.2) Potri.013G105300 [exp] 1013 / 0 AT1G22930 893 / 0.0 T-complex protein 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05794 [flax] [poplar] Tcp11 T-complex protein 11
Representative CDS sequence Show only first row Show all	>Lus10015468 pacid=23173585 polypeptide=Lus10015468 locus=Lus10015468.g ID=Lus10015468.BGIv1.0 annot-version=v1.0 ATGGCTACAGGAGTAGAATCATCACCACCGTCGTCGGAGGCGGCGGAGAAGGCGACTGTTAGTGGAATCGTGCTTGATTTTCCGGTGAGTGACGCTACTC TATCGTCTTCGCCGCCTAGAATTCCCAGGCGGCTTCGTAAGAGGATGCTGGAGACTAAAGCTTCCCCTGTAAGTAGCGTGGAGGAGATCGAAGCTAAGCT TCGCGATGCTGATATCCGTAGGCAGTCAGACGACTCTGAATGTTTATTGTTTTTCACCTTCCTTGTGCAAGCGCAGCAATTCTATGAAATGCTGTCAACT AAAGCAAGGCCAAAACCCAGAAGCCCTTCCCGGTCTTCCTCTCAAGATGAAGATCTTGGCCAACGACTTGAAGCCAAACTTGTAGCTGCAGAGCAGAAAA GGTTGAGTATCCTTACCAATGCACGAATGCGCTTAGCTAAGCTGGATGAATTACGCCAGGCGGCAAAATCTGGGGTAGAGAGGCGTTTTGAGAGAGAAAG GCAGAGGCTTGGAACTAAAGTGGAATCACGTGTTCAACAGGCTGAGACAAATAGGATGCTTCTCTTGAAAGCTTACAAGCAGCGCCATGCTTCTCTGAAG GAGAGAACGTCCCAGTCATTGATGCGACGAGTGGCCAGGGAGAGCAAATACAAGGAACGTGTGAATGCAGCAATTAACCAAAAGCGTGCTGCTGCAGAGA GGAAGAGACGGGGGTTGATGGAGGCCGAGAAGAAGAAAGCATGTGACAGGATTCTGCAAGTGCAGCAAGTAGCTAAGTCTGTCTCTTATAATCGTGAGAT TGAGAGGAGAAGAATGAGGGACCAATTGGAAGATCGGTTGCAAAGGGCTAAAAGACAGAGAGCAGAATACTTGAGGCAGAGGTGCAGACAGCGTGGTTCT GTTCAAGTGAATTTGAAGAGGATGGAAAAACAGGCTGAAATTCTTTCAAGGAAATTGGCCAGGTGCTGGAAGAAGTTCATTTCCTCGAGGAGAACAACCT TAGAGCTGGTAAAGGATTATGATTCCTTGACGATAAATGAAAACTCTATGAAGACGATGCCGTTTGAGCAGGTGGCTTCTGTGATTGAATCACCTGCTAC CCTGCGAAAAGTAAAAGCTCTGCTAGACCGGCTGGAAAGCCGATATAATGTCTGCAGGGTAGTTGATGCCGCCAGCTATTCTTCTACACTAGACAACATT GACCACTTACTGAAAAGAGTAGCGAGTCCTAAGAGAAGACCTGCACCCAGATCCACTGTGAGGAACAGAGATGCAAAGACTGCTAGTACTATGAGGGAAG TGACTAGAAGTCCGGCTAAATCATCCAGGTATTCAGTGAGAGTTGTTCTTTGTGCCTACATGATTTTGGGCCATCCGGATGCTGTTTTCAGTGGTCAAGG AGAGAGGGAAGCTACCTTGGCAGAGTCTGCAAAGGATTTTATTCATGAGTTTGAGTTGTTGGTAAGGATTATTCTGGAAGGACCTGTTCAGAGCTCTGAT GATGAGTCAGACTCGGTGCTATCAAAGCGTTGTACCTTCAGGCCCCAGCTTGCAGTGTTCGACAAAGCATGGTGTACATATTTGAGTTGCTTTGTCGCGT GGAAAGTTAAAGATGCTCGGTCATTGGAGGAGGATTTAGTAAGAGCAGCCTGTCAGCTTGAGCTATCAATGATTCAAAAATTGAAGCTGTCTCCTGAAGG GAACGCTGATGTTCTAACTCATGATATGAAGGCCATTCAGAAACAGGTATCAGAAGACCAAAAACTTCTGAGAGAAAAAGTACAGCATCTTGGTGGGGAT GCTGGGATCTTGAGGATGCAATCTGCATTGGATAAGATGCGCTCAAAGTACTTCGAAGCAAAGGAAAATGGTAGTCCTGTCGGTTCACCAATTATGAACT TAACATCTCCTGTCATGCCTAGTTTTATTGGAAGTGCTGGTCCCTCTACATCTAGCAGTGCTGTCAAAGATGAGACGCCAAGTCGAATAGTTCGTTCTTT GTTCAAGGATGTTGACACTGGGCCATCCAAACAAGCAATTTCCTCATCAGCTGGCCCACCCAAACCACCAAGTTTCACTGCTACTAGCACCAGCGGCTCT GCTGATCGACTGAGTGGTGGTTCTTCTAAAACAGTGGTCACAGAGAATGAAGTTGTTCTGAATGAGCTTCTTCATGAGAAGCAAAGGGGTCTAGTTGGCA GGTTTGATGCTGCTAAAAAAGATGAACAGAGCCTAAAGGCAAAGGTAAGAGAGACAATGGAGAAGGCTTTCTGGGACAGTATCATGGATTCTGTGAAACA AGAGGGGCCAGACTATGATAGGGTCGTTAACCTTGTGAAAGAAGTGAGGGATGAAATCAGTGAGATGGCTCCTGAGAGCTGGAGACAAACCATCGCTGAA GCTATTGATCTTGACGTTCTTGTTCAGGTGCTGAAGTCGGGCAGCTTCGATATCGAGTACCTTGGGAAGATTCTAGAGTTTGCCTTGGCTACGTTGCAAA AGCTCTGTTCCCCTGCCCACGAGGATGAAATGAAAGTAAAATACCAGAATTTACTAGGAGAGTTGGCTGAAACATGTCAAATTAGTGATAATTCTAAGAG TTCTCAGGCTGTGGCTATGATTAAAGGCCTGCGCTTTGTGCTGGAGCAGATTCAGGCCCTCAAGAGCGAGATCAGCAAAGCTCGAATAAAGTTAATGGAG CCATTGTTGAAAGGTCCTGCTGGTTTGGATTACCTTAGAAAAGCCTTCTCAAATCGTTACGGCTCACACATGGATGCTTGTTCGTCGCTACCATTGACAA AGCAGTGGCTTTCTTCCGTGAGAAGTTGCAAAGATCAGGAAATAGAAGAGCATAATAACTGTGTCTCAACTCTGATAAGCCATGATTACCCATCTCAGGT GTTCCTTCCCTCAACTGCACTTAGGACGGGTGGCAGCTTTCAGGTGAAAGGTAGCACGGCAGCCAATGCAGGTAATGAACAATTGGTGGTTCCTGAATGT TCCGGTGACACAGTTGATCAATTGGTGAGGCTTGGATTGCTGAAATTGGTGAGTGAGATTTCCGGTATAACCCCAGAAACTCTCCCCGAAACTTACTCAA TCAACTTGTCCAGATTGAGGGGTGTCCAGGTTGAAATCCAGAAACTGATTGTGATTGCGACCAGGCAAGTGTTTCTATTTGTTTTAGTTTATCGGCAGAC TCTCATGATGGAGCGAGCTGTATCCAGCAATGCCGAGATGGAGAGCATCGTATCAAAGTGCATTCAAGAAGTGTTGCAACTCTTGGACGGCGGTGGTGAA AATATCGGCATCGATGAAATCGTCAGCGTAATAAGCAGCTTCCCAGAAGGTTCAGAAGCTTCCTGTGATTCCCAGAAGCTTAAGTCGAGAAAGGAAGTGA TGGGTAGGATATTAGGAAGGAGCTTGCAGGCAGGCGATCCCATTTTCGGAAAAGTGTCCCGAGCTGTGTACTTGGGTGCGAGAGCGGTTGTATTAGGAGG CAGCGGAACAAAAGGAAGAAAGCTAGCAGAAGCTTCTCTACGTCAAGTTGGTGCCGTCGGTCTGACTGATAAGGTTGTGGAGGTTGCAGAAGTATTGGTG GTGGCCGCGAATGTGTCGGTTGGAGTCCACGGGCAATGGTATTCAACTTTGGTGGAGAGTATGTAA
AA sequence Show only first row Show all	>Lus10015468 pacid=23173585 polypeptide=Lus10015468 locus=Lus10015468.g ID=Lus10015468.BGIv1.0 annot-version=v1.0 MATGVESSPPSSEAAEKATVSGIVLDFPVSDATLSSSPPRIPRRLRKRMLETKASPVSSVEEIEAKLRDADIRRQSDDSECLLFFTFLVQAQQFYEMLST KARPKPRSPSRSSSQDEDLGQRLEAKLVAAEQKRLSILTNARMRLAKLDELRQAAKSGVERRFERERQRLGTKVESRVQQAETNRMLLLKAYKQRHASLK ERTSQSLMRRVARESKYKERVNAAINQKRAAAERKRRGLMEAEKKKACDRILQVQQVAKSVSYNREIERRRMRDQLEDRLQRAKRQRAEYLRQRCRQRGS VQVNLKRMEKQAEILSRKLARCWKKFISSRRTTLELVKDYDSLTINENSMKTMPFEQVASVIESPATLRKVKALLDRLESRYNVCRVVDAASYSSTLDNI DHLLKRVASPKRRPAPRSTVRNRDAKTASTMREVTRSPAKSSRYSVRVVLCAYMILGHPDAVFSGQGEREATLAESAKDFIHEFELLVRIILEGPVQSSD DESDSVLSKRCTFRPQLAVFDKAWCTYLSCFVAWKVKDARSLEEDLVRAACQLELSMIQKLKLSPEGNADVLTHDMKAIQKQVSEDQKLLREKVQHLGGD AGILRMQSALDKMRSKYFEAKENGSPVGSPIMNLTSPVMPSFIGSAGPSTSSSAVKDETPSRIVRSLFKDVDTGPSKQAISSSAGPPKPPSFTATSTSGS ADRLSGGSSKTVVTENEVVLNELLHEKQRGLVGRFDAAKKDEQSLKAKVRETMEKAFWDSIMDSVKQEGPDYDRVVNLVKEVRDEISEMAPESWRQTIAE AIDLDVLVQVLKSGSFDIEYLGKILEFALATLQKLCSPAHEDEMKVKYQNLLGELAETCQISDNSKSSQAVAMIKGLRFVLEQIQALKSEISKARIKLME PLLKGPAGLDYLRKAFSNRYGSHMDACSSLPLTKQWLSSVRSCKDQEIEEHNNCVSTLISHDYPSQVFLPSTALRTGGSFQVKGSTAANAGNEQLVVPEC SGDTVDQLVRLGLLKLVSEISGITPETLPETYSINLSRLRGVQVEIQKLIVIATRQVFLFVLVYRQTLMMERAVSSNAEMESIVSKCIQEVLQLLDGGGE NIGIDEIVSVISSFPEGSEASCDSQKLKSRKEVMGRILGRSLQAGDPIFGKVSRAVYLGARAVVLGGSGTKGRKLAEASLRQVGAVGLTDKVVEVAEVLV VAANVSVGVHGQWYSTLVESM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22930			T-complex protein 11 (.1.2)		Lus10015468 [exp]	0	1
AT1G22930			T-complex protein 11 (.1.2)		Lus10001363 [exp]	1.0	0.9463
AT4G32250			Protein kinase superfamily pro...		Lus10002923 [exp]	3.5	0.8914
AT3G51130			unknown protein		Lus10025972 [exp]	4.7	0.9039
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007656 [exp]	5.7	0.8890
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10016702 [exp]	7.1	0.8662
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10002257 [exp]	8.4	0.8933
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10001114 [exp]	9.8	0.9013
AT1G14780			MAC/Perforin domain-containing...		Lus10041285 [exp]	11.0	0.8735
AT1G54610			Protein kinase superfamily pro...		Lus10001715 [exp]	11.0	0.8991
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	11.8	0.8850

Compare expression of checked genes

Lus10015468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.