Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30300 188 / 3e-53 Major facilitator superfamily protein (.1) AT5G45275 143 / 1e-36 Major facilitator superfamily protein (.1) AT1G31470 139 / 5e-35 NFD4 NUCLEAR FUSION DEFECTIVE 4, Major facilitator superfamily protein (.1) AT4G19450 138 / 8e-35 Major facilitator superfamily protein (.1) AT3G01630 122 / 2e-29 Major facilitator superfamily protein (.1) AT1G80530 92 / 2e-19 Major facilitator superfamily protein (.1) AT2G16660 91 / 4e-19 Major facilitator superfamily protein (.1) AT4G34950 89 / 2e-18 Major facilitator superfamily protein (.1) AT5G50630 70 / 2e-12 Major facilitator superfamily protein (.1) AT5G50520 70 / 2e-12 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019941 [exp] 748 / 0 AT2G30300 307 / 1e-98 Major facilitator superfamily protein (.1) Lus10015470 [exp] 405 / 2e-135 AT2G30300 351 / 2e-115 Major facilitator superfamily protein (.1) Lus10026422 [exp] 192 / 5e-54 AT2G30300 379 / 5e-126 Major facilitator superfamily protein (.1) Lus10034738 [exp] 138 / 7e-35 AT4G19450 691 / 0.0 Major facilitator superfamily protein (.1) Lus10033271 [exp] 128 / 3e-32 AT4G19450 516 / 0.0 Major facilitator superfamily protein (.1) Lus10042234 [exp] 108 / 2e-27 AT2G30300 116 / 3e-31 Major facilitator superfamily protein (.1) Lus10033270 [exp] 94 / 2e-22 AT5G45275 178 / 4e-54 Major facilitator superfamily protein (.1) Lus10001678 [exp] 97 / 6e-21 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 97 / 6e-21 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G126700 [exp] 404 / 1e-135 AT2G30300 427 / 4e-145 Major facilitator superfamily protein (.1) Potri.013G154000 [exp] 391 / 7e-131 AT2G30300 380 / 4e-127 Major facilitator superfamily protein (.1) Potri.001G128200 [exp] 243 / 9e-73 AT4G19450 774 / 0.0 Major facilitator superfamily protein (.1) Potri.013G084000 [exp] 223 / 1e-65 AT2G30300 241 / 2e-73 Major facilitator superfamily protein (.1) Potri.003G105600 [exp] 135 / 7e-34 AT4G19450 734 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 98 / 2e-21 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 96 / 8e-21 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 92 / 2e-19 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 89 / 1e-18 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 87 / 1e-17 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10015469 pacid=23173665 polypeptide=Lus10015469 locus=Lus10015469.g ID=Lus10015469.BGIv1.0 annot-version=v1.0 ATGAAGATCGCCAAAAATGACTCCAAAGCCAGAGGATCATCATCAGCTGCACCGTGGTTGAGCCTAGTGGCAGTGATATGGCTGCAAGCGGTGATCGGAA CCAACACCAACTTCGCCGCTTACTCCTCTCAGCTCAAGCAGTACCTCTCCCTCTCCCAGTTCCAGCTCAACGACCTCGCCTTCGCCTCCGACGCTGGTAA GCTCTTCGGCTGGATTTCCGGCGTAGCCGCCGATCACTTCCCGCTCTGGCTCGTCCTCATCATCGGATCGTCTCTCGGCTTCGTCAGCTACGGCTTGCAG TTCCTCTCGCTAAACGGTGCCGTTGCGTCATCGTCTAATTCGTTGCCATCCGCGTGGTTTCGGTCTTATCCGGTGATCTTCATCCTAAACACCGTCGCCG GGAACAGCATCTGTTGGGTCAACACGGTGTGCTACATGGTGATCAGCCAGAGCTTCCCCTTAGACCAACAGGTAGCGGTGGGGCTCACAACCAGCTACCA GGGACTGACTACAAAGATCTACGCGGTGGTCGTGAACGAGCTCTTCTCGTCGCCATCGTCCTCTGCGGTGAAGTCGTACCTCCTCCTCGACTCCCTCTTC CCTCTCATAGTCTCCGCACTCGCCCTCCTTCTAATGATCAACCACTTCTCCTCTTCATCCTCCTCCTCCTCGAACTTGGTGTTAATGGGAGGGAAACGGC ACCGTGTAGGGTTCATGGGATTATTCGTGATCACCACGGTAACGGGCGCATGCGCCGTGATGAGTAGCTTGAGCGGCAAGGTATACGATCTTTTCCCGTA TTGCGGGATGGTGTTCACGTTGGGACTTCTCCTGGCCCCACTGGCGATCCCAGGTGGAGTTTTTATCATCAAAAAGTACTGCCAGGTGGAATATGGCGGC GGTGATGAGGAGAGAGATAATAGTGGTACCATTAGCGAGGAAACTGCGGCGGCGGCGGCAGAGAAGGAGCTGGTGAAAGAGGAGGCAGGGGTGAAGGTGA TGCTGCAAAGGACGGAGTTCTGGCTGTACGTGTTTGTGTACTTTCTGGGGCCCACCATCGGGATAGTGTATCTGAACAACTTGGGACAGATTTCGGAGTC GCGTGGGTGTTACGACACAACGTCGTTGGTTTCATTGTCGTCGTCGTTCACTTTCTTCGGCCGACTCCTCCCTTCGTTTCTCGACTACTTCTTCTCCAGG AGCAAGTATCTGCCAGCAAGAACAGCGATCCTAGTGATGCTAATGGCACCAATAACAGGATCACTAGTCCTCCTCCTCAACAACTCCCACACAGCGCTCT ACATTAGCACAGCAGTCATAGGGATATGCACCGGCGCCATCACTTCCATCGCAGTCTCGGTAACATCGGAGCTCTTCGGTTCCAAGAACTTCGCAGTGAA CCACAACATAGTGGTGGCCAACATCCCCGTGGGTTCCTTCTGCTTCGGGTACCTGGCCGCTCAGGTTTACCAGAGCGAGACGTTGCCCGGACAGTCGAAA TGCATGGGGACGGAGTGTTACCATCGGACTTTCGTGGTTTGGGCTCAGCTTTCTGGGTTCGGTCTCTTGCTTGCTTTTCTCTTGTACAATCGTACTAAAC AGTTCTACTCCAGCAGATTCGCAGCGCTCAATACTTTTTTGTATCGTTAG
AA sequence Show only first row Show all	>Lus10015469 pacid=23173665 polypeptide=Lus10015469 locus=Lus10015469.g ID=Lus10015469.BGIv1.0 annot-version=v1.0 MKIAKNDSKARGSSSAAPWLSLVAVIWLQAVIGTNTNFAAYSSQLKQYLSLSQFQLNDLAFASDAGKLFGWISGVAADHFPLWLVLIIGSSLGFVSYGLQ FLSLNGAVASSSNSLPSAWFRSYPVIFILNTVAGNSICWVNTVCYMVISQSFPLDQQVAVGLTTSYQGLTTKIYAVVVNELFSSPSSSAVKSYLLLDSLF PLIVSALALLLMINHFSSSSSSSSNLVLMGGKRHRVGFMGLFVITTVTGACAVMSSLSGKVYDLFPYCGMVFTLGLLLAPLAIPGGVFIIKKYCQVEYGG GDEERDNSGTISEETAAAAAEKELVKEEAGVKVMLQRTEFWLYVFVYFLGPTIGIVYLNNLGQISESRGCYDTTSLVSLSSSFTFFGRLLPSFLDYFFSR SKYLPARTAILVMLMAPITGSLVLLLNNSHTALYISTAVIGICTGAITSIAVSVTSELFGSKNFAVNHNIVVANIPVGSFCFGYLAAQVYQSETLPGQSK CMGTECYHRTFVVWAQLSGFGLLLAFLLYNRTKQFYSSRFAALNTFLYR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30300			Major facilitator superfamily ...		Lus10015469 [exp]	0	1

Compare expression of checked genes

Lus10015469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.