Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30300 181 / 2e-50 Major facilitator superfamily protein (.1) AT1G31470 126 / 1e-30 NFD4 NUCLEAR FUSION DEFECTIVE 4, Major facilitator superfamily protein (.1) AT5G45275 121 / 4e-29 Major facilitator superfamily protein (.1) AT4G19450 117 / 1e-27 Major facilitator superfamily protein (.1) AT3G01630 116 / 2e-27 Major facilitator superfamily protein (.1) AT4G34950 96 / 2e-20 Major facilitator superfamily protein (.1) AT2G16660 82 / 3e-16 Major facilitator superfamily protein (.1) AT2G34355 75 / 5e-14 Major facilitator superfamily protein (.1) AT1G74780 72 / 3e-13 Nodulin-like / Major Facilitator Superfamily protein (.1) AT1G80530 70 / 2e-12 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015469 [exp] 387 / 1e-128 AT2G30300 396 / 5e-133 Major facilitator superfamily protein (.1) Lus10026422 [exp] 288 / 8e-90 AT2G30300 379 / 5e-126 Major facilitator superfamily protein (.1) Lus10019941 [exp] 158 / 4e-42 AT2G30300 307 / 1e-98 Major facilitator superfamily protein (.1) Lus10034738 [exp] 125 / 2e-30 AT4G19450 691 / 0.0 Major facilitator superfamily protein (.1) Lus10033271 [exp] 114 / 2e-27 AT4G19450 516 / 0.0 Major facilitator superfamily protein (.1) Lus10042234 [exp] 83 / 2e-18 AT2G30300 116 / 3e-31 Major facilitator superfamily protein (.1) Lus10033270 [exp] 81 / 5e-18 AT5G45275 178 / 4e-54 Major facilitator superfamily protein (.1) Lus10001678 [exp] 80 / 1e-15 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 79 / 5e-15 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154000 [exp] 202 / 3e-58 AT2G30300 380 / 4e-127 Major facilitator superfamily protein (.1) Potri.019G126700 [exp] 189 / 6e-53 AT2G30300 427 / 4e-145 Major facilitator superfamily protein (.1) Potri.013G084000 [exp] 147 / 3e-38 AT2G30300 241 / 2e-73 Major facilitator superfamily protein (.1) Potri.001G128200 [exp] 128 / 4e-31 AT4G19450 774 / 0.0 Major facilitator superfamily protein (.1) Potri.003G105600 [exp] 124 / 3e-30 AT4G19450 734 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 92 / 2e-19 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 91 / 6e-19 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 88 / 5e-18 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 74 / 7e-14 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 74 / 1e-13 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10015470 pacid=23173689 polypeptide=Lus10015470 locus=Lus10015470.g ID=Lus10015470.BGIv1.0 annot-version=v1.0 ATGACAAAAAGCGAAGCTTACAAATGGCTAAGCCTCGTCGGGGTGATATGGCTTCAGTCCGTGATCGGAACAAACTCCAATTTCCCCGTCTACTCCTCCC AACTCAAGCGCTACCTCTCCCTCTCCCAACTCCAAATCAACGCCCTCGCTTTCGCCTCCGACGCCGGCAAATTCTTTGGCTGGTTCTCCGGCTTGGCCGC TCGCCGTCTCCCACTCTGGTTCCTCCTCATCACCGGCTTGTTCCTCGGCTCAATTAGTTACGCCCTCCAGCTCATCTTCCTCCACGACGACAAAGATGAC AAACCGATTATTGTCATCCAATCCTTCCTCCTCTTTTTTATCCTCATCTTCCTCGCCGGCCACAGCATCTGCTGGATCACCACCGTCTCCTACATGCTCC TCAACCGAAACTTCCCCGCCGACCAGCAATTCGCCGTCGGGATCGCCACCAGCTACCAAGGCCTCACCCCTAAGGTCTACGCTGTCTTCGTCGACGAGCT CCTCTCCTCCGACGGCGCCGTAGCCTACATTTTCCTGAGCTCCATCCTCCCACTCTTCGTCGCCGTTTTGGTCTTGCTTTTATTAGTTAACGATTTCAAC CCGCGACCCGACCGGAAAACAATTGACCCGCCCCACCGTACTGCAAAGAAACGACACCGCTTTGAGTTTGTGGGTATGTTTGTGATCACGACGGTGACGG GAGTGTACGGGGTGGTTAGTAGCGTGAGCTCCAAGCTGTGGCGTTTGTTTCGTTACAGCGGGGTGGTTTTCACCGTGGCGCTTCTTTTACTGCCGCTGGT GATTCCGTTGGGAGTGGTGGCGAGGAAGGTGGTGGGTGAAAAATTACGTGAGGGTAAAAACTTGGAGGTAATAATAAAAATGGATCATCGTGCCAATGGA CTTGTTAAAGTGGGGGAAGCGACGTCGTGCGGTAGTATGAAAGGAGGCGGGGAGGAGGAAGGAATGAATAATATGATGATGAGGGTGAAGGAGGAGATAG GGTTGAAGAAGATGGTTCAAAGAATGGAATTTTGGTTGCATTTCTTTGTGTATTTGTGTGGGCCCACAATGGGGATGGTTTTTTTGAATAATTTGGGACA GATTTCGGAATCGCGACTGTTTGTTCATACAAGTTCGTTGGTTTCATTATCTTCATCCTTCACTTTCTTCGGCCATCTTCTCCCGTCTTTTCTCCATTAC TTCTACTCCAGAAGCAAGTATTTACCAACAAGACCAGCTCTATTAGTGATGTTAATGACAACAATGGGAGGAGCATTCCTCCTGATCCTGGACGAAGGCC ACACATCTCTGTACATAAGCACGGCTCTCATAGGGATAAGTACGGGAGCAATAGCTTCGATATCGGTCACCATAACTACAGAACTCTTCGGTCCAAAGCA TTTCGGAGTCAACCACACCATTGTCGTGGCTACCATCCCAATCGGGTCGCTCTGTTTTGGGTATTTGGCGGCTCTGTTTTACGAGACGGAGAAGCACGTG GACGAGTCCAAATGCATGGGACAAAGTTGCTATCAAGCCACTTTCCTTCTGTGGGGCTGCCTTTCCACTTTCGGAGCTCTGCTTTCTTTTGTTCTGTATC GCCGCACCAGAGAGTTTTATTCCACTACGACGTGCGGCTTGAAGACGCTTCATAGCTTTTCGTGA
AA sequence Show only first row Show all	>Lus10015470 pacid=23173689 polypeptide=Lus10015470 locus=Lus10015470.g ID=Lus10015470.BGIv1.0 annot-version=v1.0 MTKSEAYKWLSLVGVIWLQSVIGTNSNFPVYSSQLKRYLSLSQLQINALAFASDAGKFFGWFSGLAARRLPLWFLLITGLFLGSISYALQLIFLHDDKDD KPIIVIQSFLLFFILIFLAGHSICWITTVSYMLLNRNFPADQQFAVGIATSYQGLTPKVYAVFVDELLSSDGAVAYIFLSSILPLFVAVLVLLLLVNDFN PRPDRKTIDPPHRTAKKRHRFEFVGMFVITTVTGVYGVVSSVSSKLWRLFRYSGVVFTVALLLLPLVIPLGVVARKVVGEKLREGKNLEVIIKMDHRANG LVKVGEATSCGSMKGGGEEEGMNNMMMRVKEEIGLKKMVQRMEFWLHFFVYLCGPTMGMVFLNNLGQISESRLFVHTSSLVSLSSSFTFFGHLLPSFLHY FYSRSKYLPTRPALLVMLMTTMGGAFLLILDEGHTSLYISTALIGISTGAIASISVTITTELFGPKHFGVNHTIVVATIPIGSLCFGYLAALFYETEKHV DESKCMGQSCYQATFLLWGCLSTFGALLSFVLYRRTREFYSTTTCGLKTLHSFS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30300			Major facilitator superfamily ...		Lus10015470 [exp]	0	1
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10003756 [exp]	1.4	0.9064
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Lus10037099 [exp]	2.4	0.8863
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016187 [exp]	4.5	0.7946
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10015092 [exp]	8.8	0.8021
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	12.0	0.7920
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	13.2	0.7920
					Lus10010383 [exp]	14.2	0.7920
					Lus10000380 [exp]	15.2	0.7920
AT1G08590			Leucine-rich receptor-like pro...		Lus10002754 [exp]	15.5	0.7618
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10037911 [exp]	16.2	0.7909

Compare expression of checked genes

Lus10015470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.