Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48540 41 / 6e-05 receptor-like protein kinase-related family protein (.1) AT4G05200 41 / 0.0001 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT3G22030 39 / 0.0004 Receptor protein kinase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028019 [exp] 140 / 8e-44 AT1G70530 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10012369 [exp] 133 / 5e-41 AT4G11470 42 / 6e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) Lus10028018 [exp] 107 / 1e-30 ND 39 / 5e-04 Lus10003724 [exp] 94 / 4e-25 AT1G70530 45 / 7e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10028017 [exp] 75 / 2e-16 AT1G03250 316 / 1e-106 unknown protein Lus10033450 [exp] 67 / 5e-15 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10020927 [exp] 63 / 3e-13 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10033389 [exp] 60 / 4e-12 AT1G19090 44 / 2e-05 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10011894 [exp] 57 / 5e-11 AT3G60720 38 / 9e-04 plasmodesmata-located protein 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G025900 [exp] 47 / 7e-07 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G024900 [exp] 47 / 7e-07 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.005G208400 [exp] 45 / 1e-06 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.004G024404 [exp] 46 / 2e-06 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028100 [exp] 44 / 1e-05 AT4G05200 519 / 8e-177 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.002G249600 [exp] 43 / 1e-05 AT5G48540 256 / 7e-86 receptor-like protein kinase-related family protein (.1) Potri.004G024500 [exp] 43 / 2e-05 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025001 [exp] 43 / 2e-05 AT4G05200 465 / 4e-158 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G027900 [exp] 43 / 2e-05 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027800 [exp] 43 / 2e-05 AT4G23180 516 / 9e-176 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10015472 pacid=23173670 polypeptide=Lus10015472 locus=Lus10015472.g ID=Lus10015472.BGIv1.0 annot-version=v1.0 ATGGCGTCCACAGTTCTAGTACTGCTAGCGATCTCCGGAGTCGTCGTTCTAATAATCGGATCGGTCGAGCATGTAAGGAGCATGGAAGTGAACACCTGTG TATGCAGCACCTTCAAGTATCCAGCGCACGATGTGAAGAGATTCCTCGTCGAAGACCTTCTAGAAGACCTGGCGAAAAGTCCGATATCTCACTGGAGGGA TCGCGCCCTGGCGTTATCGATTCCCAGGAAGCACCCTTTGATTTACGCCTACGCCAACTGCACTGCTCCTGCTTATCGTGAGTCCGATGTCCATGACTGT AACCAATGTCTGAGGCTGGCCAAACGGAACTTACTCCGTAACTGTCCCCATCGGGTTGGGGCACAAGTGTATTTTGACCTTTGTTATATGAGGTACGAAG CTTACCCTTTTTGA
AA sequence Show only first row Show all	>Lus10015472 pacid=23173670 polypeptide=Lus10015472 locus=Lus10015472.g ID=Lus10015472.BGIv1.0 annot-version=v1.0 MASTVLVLLAISGVVVLIIGSVEHVRSMEVNTCVCSTFKYPAHDVKRFLVEDLLEDLAKSPISHWRDRALALSIPRKHPLIYAYANCTAPAYRESDVHDC NQCLRLAKRNLLRNCPHRVGAQVYFDLCYMRYEAYPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48540			receptor-like protein kinase-r...		Lus10015472 [exp]	0	1
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	3.0	1.0000
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10003650 [exp]	3.2	1.0000
					Lus10003840 [exp]	5.2	1.0000
					Lus10012429 [exp]	5.5	1.0000
					Lus10005396 [exp]	6.0	1.0000
AT3G05950			RmlC-like cupins superfamily p...		Lus10029010 [exp]	7.0	1.0000
					Lus10022573 [exp]	7.3	1.0000
					Lus10007179 [exp]	7.9	1.0000
					Lus10006661 [exp]	8.5	1.0000
					Lus10021548 [exp]	9.2	1.0000

Compare expression of checked genes

Lus10015472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.