Plant FIBer expression Database

Lus10015473 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G77855 69 / 7e-14 unknown protein
AT1G22030 65 / 2e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019943
[exp]
253 / 2e-84 AT1G22030 241 / 9e-78 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G211900
[exp]
101 / 9e-26 AT1G22030 291 / 2e-97 unknown protein
Potri.002G090300
[exp]
80 / 8e-18 AT1G22030 360 / 2e-124 unknown protein
Potri.005G170700
[exp]
76 / 2e-16 AT1G22030 358 / 9e-124 unknown protein
Potri.003G018700
[exp]
67 / 3e-13 AT1G22030 266 / 2e-87 unknown protein
PFAM info
Representative CDS sequence
>Lus10015473 pacid=23173620 polypeptide=Lus10015473 locus=Lus10015473.g ID=Lus10015473.BGIv1.0 annot-version=v1.0
ATGGGGGTGGAGGAAGACAACAGGAGCTTAGTGGAGACGAGAGTAAAAGCACTGTGTGTCCAATTCACGAGAACTGACGATTCTGATCATCATCACTACC
AAACTGAATCCAGGATGAACGGATTCAACGGATTCACAGGAGTTCTGTTCGCCATGAGGAAAGTAACCACTCTGCTTCTCAACATTCTGTTCGGAGGCCT
AGTTTACTTCTCCCGCCAGGATGATGATCATGATCAAGAATTGGTATTAGGGTACAACAACAACAATAATCGGAACAGCTACTTATCGGGATCGGTGAGT
TTGCTGATGGGAACGACGGCGAGGTTGAATCAACGAGTGGCGATGATGACGGGGAATGGAGGGGGGATAATGATGAGCGAGTTTGGGGAGGTGAAGAAGG
CGATGGAAGAGGTGAAACTGGAAGTGGAGAAACAGGAGGAGGAAGAGATTGATCATAATAATCATAAAATGGAAGAGAAAGTGGAGAAGATGGAGAGGTG
TTTCGGGAAGCTGAGGAGTGGGGTTGAGTCCATAATTGGTGGGCTTGATGATTTCCTGGATGATATTGTTGATTCCAGAAAGAAGCTTTTGAAGATTTGT
AGCACACATAGGCAGTAG
AA sequence
>Lus10015473 pacid=23173620 polypeptide=Lus10015473 locus=Lus10015473.g ID=Lus10015473.BGIv1.0 annot-version=v1.0
MGVEEDNRSLVETRVKALCVQFTRTDDSDHHHYQTESRMNGFNGFTGVLFAMRKVTTLLLNILFGGLVYFSRQDDDHDQELVLGYNNNNNRNSYLSGSVS
LLMGTTARLNQRVAMMTGNGGGIMMSEFGEVKKAMEEVKLEVEKQEEEEIDHNNHKMEEKVEKMERCFGKLRSGVESIIGGLDDFLDDIVDSRKKLLKIC
STHRQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G22030 unknown protein Lus10015473
[exp]
0 1
AT1G46480 HD WOX4 WUSCHEL related homeobox 4 (.1... Lus10018726
[exp]
2.2 0.9378
AT1G46480 HD WOX4 WUSCHEL related homeobox 4 (.1... Lus10024808
[exp]
4.5 0.9278
AT2G01950 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like ... Lus10039132
[exp]
6.6 0.9148
AT1G71740 unknown protein Lus10041497
[exp]
9.5 0.9076
AT2G34700 Pollen Ole e 1 allergen and ex... Lus10014013
[exp]
11.0 0.9072
AT4G22560 unknown protein Lus10028927
[exp]
13.2 0.9097
AT3G07390 AIR12 Auxin-Induced in Root cultures... Lus10025879
[exp]
13.2 0.9169
AT4G23740 Leucine-rich repeat protein ki... Lus10033936
[exp]
17.7 0.8867
AT3G54260 TBL36 TRICHOME BIREFRINGENCE-LIKE 36... Lus10014358
[exp]
18.9 0.8898
AT3G25590 unknown protein Lus10034409
[exp]
19.4 0.9082

Lus10015473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.