Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22200 1082 / 0 AKT3, AKT2/3 potassium transport 2/3 (.1) AT2G26650 624 / 0 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT2G25600 576 / 0 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 566 / 0 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT5G46240 520 / 1e-174 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 506 / 1e-168 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G32650 415 / 5e-135 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT3G02850 397 / 2e-125 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 394 / 4e-124 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT5G57940 69 / 9e-12 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019944 [exp] 1573 / 0 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10043298 [exp] 603 / 0 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019442 [exp] 599 / 0 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10002529 [exp] 598 / 0 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10033052 [exp] 588 / 0 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10013115 [exp] 549 / 0 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10008082 [exp] 546 / 0 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10028128 [exp] 532 / 3e-178 AT5G46240 827 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10042831 [exp] 526 / 5e-176 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G018800 [exp] 1187 / 0 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.018G031600 [exp] 602 / 0 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G071400 [exp] 597 / 0 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.006G249900 [exp] 577 / 0 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.004G132200 [exp] 552 / 0 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.006G245000 [exp] 466 / 4e-154 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 437 / 6e-143 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 435 / 2e-142 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.017G135400 [exp] 397 / 3e-125 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.004G083300 [exp] 394 / 4e-124 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0030 [flax] [poplar] PF11834 [flax] [poplar] KHA KHA, dimerisation domain of potassium ion channel CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10015474 pacid=23173588 polypeptide=Lus10015474 locus=Lus10015474.g ID=Lus10015474.BGIv1.0 annot-version=v1.0 ATGGAGGAAGATGACCATGATGATGAGAAGAAGAAGAAGGAGGAGAAGAAGACTGTGAAGTTGGAAAATCACACTTCCATGGATGAAGAATTACAAGATG ACAAAAACGAAGGAGGAGGAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAAACTCATCAATTTCACTATCTGGGTTGTCAAAGATTGTTCTTCCACCTCT TGGTTCATCAGGGAACAGCTACCTGCAGAACCCTCAAGCCTCCAAAGGATGGATCATTTCTCCCATGGATTCTACTTACAGGTGTTGGGAAACATTTATG GTGATACTGGTTGCATACTCGGCATGGGTTTATCCATTTGAAGTAGCATTCTTGAAGTCAGCCCCAACTCCCGGTAAGAACCTTTACATCGCCGACTCAG TCGTCGACGCCTTCTTCGCCGTTGACATCGTCCTGACATTCTTCGTCGCTTACTTTGACTCTCGAACCCAGCTCCTTGTCCGGAAACCTAGAAAGATAGC CACCAGGTATCTATCGACATGGTTCATAATGGATGTTGCTTCTACGATGCCTTTTGAGGCATTGGGTTACTTATTCACTGGGAAACAACATTTGGGTATT TCCTTCTCGATCTTGGGTTTGCTCAGATTCTGGCGAATCAGACGCGTGAAGCAGTTCTTCACCAGGCTTGAAAAAGATATCAGATTCAACTACTTTTGGG TCCGATGCGCCAGACTATTGGCGGTGACATTGTTCCTAGTGCATTCTGCTGGCTGCCTCTACTACTTGCTAGCAGACTTGTACCCGCATCAAGGGAAGAC ATGGGTTGGCTCTTTGATCCCAAACTACAGGGAGACCAGCGTCTGGATGAGGTACATTGCTGCTATGTATTGGTCCATCACCACTATGACAACTGTTGGT TATGGCGACCTCCATGCTGTCAACACCATGGAGATGATCTTCATCATATTCTACATGCTTTTCAACCTTGGCCTCACTGCTTATATCATTGGTAACATGA CCAATCTTGTCGTTGAAGGAACTCGTCGCACAATGGAATTCTTGAGTTTCAATTCAAGGAACAGCATTGAGGCAGCCTCGAATTTCGTGAGTAGAAACCG GCTTCCTCCCAGGCTTAAGGAGCAGATACTGGCTTACATGTGCTTAAAGTTTAAAGCTGAGAGTTTGAACCAGCACCAACTCATGGAGCAGTTACCAAAG TCCATCTGCAAGAGTATCTGCCAGAGGTTGTTCTTGCCAACTGCTGAAAGAGTTTATCTCTTCAAGGGTGTTTCCAGGGAGATTCTCTTGCACTTGGTGG CTAAGATGAAAGCCGAATACATTCCTCCACGCGAAGATGTCATCATGCAGAACGAAGCACCTGACGATCTATACATAATCGTGTCAGGAGAAGTCGAGAT GATCGACTGTGATCTTGATAAGGAGTTGGTAGTTGGGAGTTTGCAAAGTGGAGAGATGTTTGGAGAAGTTGGAGGTTTGTGTTGTAGGCCTCAGAGCTTC ACTTTCAGGACCAGGACCATTTCGCAGCTTTTGAGGCTCAAAACTAGTGCTCTTATTGAAGCAATGCACTCTAGGCAGGATGATTATGTGGCCATAATCA AGAACTTTCTCCAGCATCATAGGAAAATAAGAGATTTAAAGATAGGTGACTTCCTGTTTGATGGCGGAGAAGAAGAAAGTACTGGTGATAGAAGTATGGC TTTCAATTTGCTTTCTGTAGCCAGTACTGGCAATGCTGCTTTCCTGGAGGAACTTCTCAAGGCAAAGTTCGATCCTGATATCGGTGACTCGAAAGGCAGA ACTCCATTGCATATAGCTGCATCAAAAGGGCATGAAGAATGTGTGTTGGTACTTTTAAGGCATGGATGCAACATTCACTTGAGAGATATGAGCGGCAACA CTGCTTTATGGCAAGCTCTATCGTCACAACACTCATCCATCTTCAGGATATTGTACCAATTTGCAATCATGTCAGATCCAAACACTGCCGGGGATCTCTT ATGCACGGCCGCCAGAAGAAATGATGTGAGCATGATGAAGGAGCTACTGAAACAAGGACTAAACGTCAACTCGAAAGATCGTCAGGGGGAATCCGCAGTG CAAATAGTCATGGCTGAAAACCACGTCCAGATGCTCGATTTGCTTGCGATGAACGGCGCGGATGTTTCAAATGAAGAGTCGAACAACGAAACACTGATGA GACAAGAAGAGAATGATCTCACTGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGATGAAGGAGATCACGAGCATAAATCTGGCGGGTT CGATTGTGCAAGAGTGAGTATATTTAGGGGCCATCCTATTGTGAGGAAAGAAAATGGTTGCAAGGAGGCTGGAAGGTTGATTAAGCTGCCAGATTCATTG GACGAGCTTAGACATTTTGCAGGGGGGAAATTCGGATTTGATGCAGGAAATGCAGTGGTAACAAATGAGGAAGGTTCAGAGATTGACTGTATTGATGTGA TAAGAGATAATGACAAGATTTTCATAGTTGATGATCCATCCAAGCTGCTATCTTTGATGCATCTTTGA
AA sequence Show only first row Show all	>Lus10015474 pacid=23173588 polypeptide=Lus10015474 locus=Lus10015474.g ID=Lus10015474.BGIv1.0 annot-version=v1.0 MEEDDHDDEKKKKEEKKTVKLENHTSMDEELQDDKNEGGGAEEEEEEEEENSSISLSGLSKIVLPPLGSSGNSYLQNPQASKGWIISPMDSTYRCWETFM VILVAYSAWVYPFEVAFLKSAPTPGKNLYIADSVVDAFFAVDIVLTFFVAYFDSRTQLLVRKPRKIATRYLSTWFIMDVASTMPFEALGYLFTGKQHLGI SFSILGLLRFWRIRRVKQFFTRLEKDIRFNYFWVRCARLLAVTLFLVHSAGCLYYLLADLYPHQGKTWVGSLIPNYRETSVWMRYIAAMYWSITTMTTVG YGDLHAVNTMEMIFIIFYMLFNLGLTAYIIGNMTNLVVEGTRRTMEFLSFNSRNSIEAASNFVSRNRLPPRLKEQILAYMCLKFKAESLNQHQLMEQLPK SICKSICQRLFLPTAERVYLFKGVSREILLHLVAKMKAEYIPPREDVIMQNEAPDDLYIIVSGEVEMIDCDLDKELVVGSLQSGEMFGEVGGLCCRPQSF TFRTRTISQLLRLKTSALIEAMHSRQDDYVAIIKNFLQHHRKIRDLKIGDFLFDGGEEESTGDRSMAFNLLSVASTGNAAFLEELLKAKFDPDIGDSKGR TPLHIAASKGHEECVLVLLRHGCNIHLRDMSGNTALWQALSSQHSSIFRILYQFAIMSDPNTAGDLLCTAARRNDVSMMKELLKQGLNVNSKDRQGESAV QIVMAENHVQMLDLLAMNGADVSNEESNNETLMRQEENDLTVKKKKKKKKKKKKKDEGDHEHKSGGFDCARVSIFRGHPIVRKENGCKEAGRLIKLPDSL DELRHFAGGKFGFDAGNAVVTNEEGSEIDCIDVIRDNDKIFIVDDPSKLLSLMHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10015474 [exp]	0	1
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10014551 [exp]	3.5	0.8133
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10035727 [exp]	6.3	0.7866
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10013044 [exp]	11.1	0.8131
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	18.2	0.7956
AT5G22930			Protein of unknown function (D...		Lus10021419 [exp]	24.7	0.7635
AT3G01360			Family of unknown function (DU...		Lus10013105 [exp]	25.0	0.7114
AT5G45850			Protein of unknown function (D...		Lus10015280 [exp]	26.3	0.7899
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10017377 [exp]	27.8	0.7838
AT5G15270			RNA-binding KH domain-containi...		Lus10033556 [exp]	29.0	0.7652
AT4G28600		NPGR2	no pollen germination related ...		Lus10023748 [exp]	35.2	0.7606

Compare expression of checked genes

Lus10015474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.