Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71220 2064 / 0 UGGT, PSL2, EBS1 PRIORITY IN SWEET LIFE 2, EMS-mutagenized bri1 suppressor 1, UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019946 [exp] 1944 / 0 AT1G71220 1474 / 0.0 PRIORITY IN SWEET LIFE 2, EMS-mutagenized bri1 suppressor 1, UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups (.1.2) Lus10003491 [exp] 55 / 7e-07 AT1G65470 635 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Lus10012765 [exp] 48 / 4e-05 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10034012 [exp] 46 / 0.0002 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G018900 [exp] 2316 / 0 AT1G71220 2371 / 0.0 PRIORITY IN SWEET LIFE 2, EMS-mutagenized bri1 suppressor 1, UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups (.1.2) Potri.010G129400 [exp] 54 / 8e-07 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8 CL0110 [flax] [poplar] GT-A PF06427 [flax] [poplar] UDP-g_GGTase UDP-glucose:Glycoprotein Glucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10015475 pacid=23173586 polypeptide=Lus10015475 locus=Lus10015475.g ID=Lus10015475.BGIv1.0 annot-version=v1.0 ATGACAAACAGAGGAACACACACGGGCAGTTTTACGGGACTACCCCTACCCGACCTTTCAGGTGGAAAAGACGATTTAGCCGTTACGAAGGGCACTGAGT CTTCTCCCTCGTCTGAAAGTCATACAAACAAACCCCTTTCTCTTCCCCGGCGGCGGCAGCTCACTGCTCATTTTGACAACCTCCCTTATTTTCCTTCCCG TGCGATCAATGTTGGATCGGTTTTCCGGTCAGGGATACCACTAGAAACACAGCTTCAATCCGTTTTGGAGTTGAGCGATGACCACGGCCGGGTTCAGATC CAGTTTCTGTGTTCTGATCATCGGAGCTTGCTTATGCTTTTCCGCGCTGGATCCCGTTTGTGGACAGAATCGAAGGCCGAAGAATGTGCAGGTTGCTGTT CGAACCAAATGGGAGGGCACCCCAATTTTACTGGAAGCTGGTTCTTAGGGATGAGTGCTACTGAGTTGTTGTTTCTCCAAAATTGTGAGTTACTATCCAA GGAATGGAAAGACCTATACTGGGAATTCATTGACATCTGGCACAAGTCGCAGAAAGATGGATCTGAGTCTTACACAGCTAAAGACTGCCTCAAAAGGATT GTTAAGATAGGCAGTGATCTTCTAAGTGATCCATTAGCCTCGTTATTTGAGTTCTCTCTTACTTTGAGATCAGCATCGCCCAGATTACAACTTTATCGAC AATTAGCAGAGGAATCTCTTGCTTCTTTTCCACCATCAGATGATAGCATATCAAATGATAGTGAGGGTTTCCTAGAGACTGCTGGTAATAATGAAATAAA GAAGTCTGATCCTTTGCTTATTGGCAGAAATCCTAGTAGCCCTGGTGGGAAATGTTGTTGGGTAGATACTGGGGGGAGACTATTCTTTGACGTTTCAGAA TTACAATTATGGCTCCGTAGTACTGCTGCTCCTGCAGGAGACTCTTTTCAGCAGCCAGAACTATTTGACTTCGACCATGTTCATTTTGACTCACATGCTG GAAGTCCTGTTGCTGTATTATATGGCGCTATAGGGACTGACTGCTTTCTGGAGCTTCATTCTACCCTGGTTGCCGCAGCCAAAGAGGGGAAGGTAAAATA TATTGTTAGACCTGTTTTACCCTGTGGCTGTGAGTCAAAAGCTCACCATTGTGCTGCTGTTGGAGCAAGAGAGTCCTTGAATTTAGCAGGCTATGGAGTA GAACTTGCTCTGAAGAATATGGAATATAATGCTATGGATGATAGCACAGTTAAAAAGGGTGTTACTTTGGAAGATCCAAGAACAGAAGATCTTAGCCAGG AAGACCCAAAGCCGGAGCTTACATCGGATACACTAGATGTTTGGGAACTTAAGGATTTAGGACATCAGACAGCACAAAGAATAGTTCAAGCTTCTAATCC TCTACAGGCGATGCAGGAAATCAACCAAAATTTTCCCAGTGTTGTTTCTTCTCTGTCTCGAATGAAGCTCAATGATTCAGTGAAAGATGAAATAACTGCA AACCAGCGAATGATTCCTCCTGGCAAGTCCTTATTGGCTCTCAATGGTGCTCTACTTAACATCGAGGATATTGACCTTTATCTGTTGGTTGACTTGGCTC AGCAGGACCTGCTATTGGCTGATCGGTTATCCAAAATGAAGGTTCCTCAGAGCACTGTACGGAAGCTTCTGTCAACGATGGCCCCACAGGAGGCCAGTGC ATTCCGTGTTGACTTCCGGTCTGTTAATGTTCATTATATCAATAACTTGGAGGAGGACTCAATGTATAAACGGTGGAGGAGCAATCTAAATGAGGCTGTT GATATGATTGTTTCATTATATGAAAACAATGTTCCAGTGAGATTTGGGTTGATATTATATTCTTCGGACTTTTTGAACAAAATAGAATTGAATGCTGGTG AATCCCATTCATCCAGCACTGAAGATAAATCCAGTTTGATCATACGTCTTTTCATATATATCAAGGAAAACTATGGAGTTCAAACGGCATTCCAGTTTCT GAGCAATGTGAATAGACTGCAGTTGGAGTCGGAAGATGTGGATGAAGCTCCTGAAATGCACCATATTGAAGGAGCTTTTGTGGACACAATTTTACCGAAA GCCAAATCCCATCCTCAAGATATGTTACTCAAACTTTTGAAGGAGCAAACGTACAAGGAGTCATCACATGAAAGCTCAAAGTCAGTTTTAAAGCTAGGTT TGTCCAAGCTGAAGTGCTCTCTCTTGATGAACGGTCTTGTCCTTGATTCTACTGAGGATGCTCTTATGAATGCAATGAATGATGAGCTTCCCAGGATACA AGAACAAGTATATTATGGTCAAATAACTTCTCGTACTGATGTATTGGACAAATTCCTCTCAGAGGGTGGCATTAGCCGATATAATCCACAAATTATTGCC GAGGGCAAGGCCAAACCCAGATTTATTTCTCTCATGTCTTCAGTTCTTGGAGAGGAATCTGTCATTAATGATATTAACTATCTGCATACTCCTGACACTG TTGATGATTTGAAGCCTGTAACTCAGCTTCTTGTTGTTGACATTGCAACAAAGACAGGGGTTAAGTTTCTTCATGAAGGAATCCGCTATCTGATTGAAGG ATCTAAAGTGTCTCGTTTGGGTGTTTTATTTACTGCGAGTAAAGACGTGGATTTACCTAGTCTCCTTTTTATGAAGGCCTTTCAAATCACTGCTTCACAA TATGGGCATAAGGAAAAGGTTTTGATGTTTCTGGACCATATGTCTACATATTTTGAGCAAAACTACATCTTTACATCTTCTGGATCAGTTGAGAGCTCAC AAATATTTATGGACAAAATCTACGAGCTTGCTGATGCAAATGGCTTGTCATTGAAAGCCTATAAATCTGCACTTCCAGAATCATCTATTGAGGACATGAC AACATATATGAGCAAGGTGGCACAATTTTTGTACAGGGAACTTAGGCTTGAATCCGGAGTTAATGCTGTCATTACAAACGGAAGGGTGACGATTCCTAGT GAAGGTACCTTTTTAAGCCATGATCTACAGCTTCTAGAGTCCGTGGAGTATAAGCAACGGATCAAGCATATTGTGGATATTATTGAAGAAGTGGAGTGGC AGGATGAAGACCCTGATTTGCTAACAAGCAAATTTGTTAGCGATGTTGTTATGTGCATCTCATCTGCAATGGCTACAAGGGAGCGAAGTTCTGAGAGTGC ACGGTTTGAGATACTGAATGGTGATTATAGTGCTGTCATTATAGAAAATGAAGGTTCCGGTGTGCATATTGATGCAGTTATTGATCCTTTAAGTCCAACT GGCCAAAAGGTGGCTTCACTTCTTAATGTTCTGAAGAAATACATTCAACCAAGCATGAGATTGATTTTGAACCCTCTGAGTTCGCTAGTTGATCTTCCTC TGAAGAACTACTACAGATATGTTGTGCCAGCAATGGATGACTTCAGCAGTACTGATCACACTGTACCTGGTCCAAAGGCATATTTTGAGAACATGCCACT ATCAAAAACCCTCACCATGAATCTGGATGTTCCTGAACCGTGGCTTATTGAGCCTGTTATTGCTGTTCATGACATGGATAATATTTTGCTTGAGAATCTG GGTGATACAAGGACAATGCAGGCGGTTTTTGAACTTGAAGCACTTGTGCTTACCGGCCATTGTTCTGAGAAAGATCATGAGCCTCCTCGAGGACTTCAGC TGATCCTTGGAACTAAGAGCATGCCTCACTTTGTGGATACCATTGTGATGGCCAATTTGGGCTATTGGCAAATGAAAGCTTCCCCTGGTGTTTGGTACTT GCAGCTTGCTCCGGGCAGAAGTTCTGAGCTTTATGCTCTAAATGAAGATGGTGTTGGGAATGAAGACCGGCATTTGTCAAAGCGCATCAACATAGATGAT TTTAGGGGTAAAGTGGTACATCTGGAAGTAGTGAAAAGGAAGGGCAGGGAACATGATAAACTACTTGTTCCCAGTGATGATGATAGCCAGCCACATGGAA GGGAGAAGGGGGCTCTTGATGGCTGGAATTCTAATTTCTTGAAATGGGCCTCTGGTATCATTGGTGTTAATGGGAAATCTAAGAATAATGAAAGCGACGT AGTGGCGAAGAAAGGAAAGGGCGGACGACATGGAACAACCATCAATATCTTTTCCATTGCTTCTGGACACCTGTATGAACGATTCCTAAGAATCATGATT CTTAGTGTCTTGAAGAACACTCAGCGTCCAGTGAAATTTTGGTTTATAAAGAACTATCTTTCTCCCCAGTTTAAGGACGTCATTCCACACATGGCTGAAG AATATGGTTTCGAATATGAACTGATCACCTATAAGTGGCCTTCATGGCTCCACAAGCAGAAGGAAAAACAGCGAATTATTTGGGCATACAAGATTTTGTT CCTTGATGTTATCTTCCCTCTGTCTTTGGAAAAGGTTATATTTGTTGATGCGGATCAGATTGTCAGAGCTGACATGGGAGAACTGTATGATATGGACATA AAAGGAAGGCCTCTAGCGTATACTCCGTTTTGTGACAACAACAAGGACATGGATGGATATAAATTTTGGAGACAAGGGTTTTGGAAAGAACATTTACGAG GACGGCCATACCACATCAGTGCTCTGTACGTAGTTGATCTTGCTAAATTTCGAGAAACTGCTGCTGGCGATAACCTGAGGGTTTTCTACGAAACTCTGAG CAAGGATCCCAACAGTCTGTCCAACTTGGATCAGGATCTTCCGAACTATGCTCAACACACAGTTCCAATATTTTCTCTACCCCAAGAGTGGCTATGGTGC GAATCATGGTGCGGCAATGCGACAAAATCAAATGCAAAGACTATCGATCTTTGCAACAACCCAATGACCAAGGAACCCAAGCTTCAGGGTGCAAGAAGAA TAGTCCCCGAGTGGGTGGATCTCGACTCTGAAGCACGGCGATTCACGGCAAAAATCTTGGGAGAAGAAGAACCAGAAGATTCAGTAGTCACGACGGCAAC CACCAAACAACCAGAGACGCAAAACCCCAGTAGTAGAGAAACTGAACCAGAAACAGATCTGGAGACCAAGGCAGAGTTATGA
AA sequence Show only first row Show all	>Lus10015475 pacid=23173586 polypeptide=Lus10015475 locus=Lus10015475.g ID=Lus10015475.BGIv1.0 annot-version=v1.0 MTNRGTHTGSFTGLPLPDLSGGKDDLAVTKGTESSPSSESHTNKPLSLPRRRQLTAHFDNLPYFPSRAINVGSVFRSGIPLETQLQSVLELSDDHGRVQI QFLCSDHRSLLMLFRAGSRLWTESKAEECAGCCSNQMGGHPNFTGSWFLGMSATELLFLQNCELLSKEWKDLYWEFIDIWHKSQKDGSESYTAKDCLKRI VKIGSDLLSDPLASLFEFSLTLRSASPRLQLYRQLAEESLASFPPSDDSISNDSEGFLETAGNNEIKKSDPLLIGRNPSSPGGKCCWVDTGGRLFFDVSE LQLWLRSTAAPAGDSFQQPELFDFDHVHFDSHAGSPVAVLYGAIGTDCFLELHSTLVAAAKEGKVKYIVRPVLPCGCESKAHHCAAVGARESLNLAGYGV ELALKNMEYNAMDDSTVKKGVTLEDPRTEDLSQEDPKPELTSDTLDVWELKDLGHQTAQRIVQASNPLQAMQEINQNFPSVVSSLSRMKLNDSVKDEITA NQRMIPPGKSLLALNGALLNIEDIDLYLLVDLAQQDLLLADRLSKMKVPQSTVRKLLSTMAPQEASAFRVDFRSVNVHYINNLEEDSMYKRWRSNLNEAV DMIVSLYENNVPVRFGLILYSSDFLNKIELNAGESHSSSTEDKSSLIIRLFIYIKENYGVQTAFQFLSNVNRLQLESEDVDEAPEMHHIEGAFVDTILPK AKSHPQDMLLKLLKEQTYKESSHESSKSVLKLGLSKLKCSLLMNGLVLDSTEDALMNAMNDELPRIQEQVYYGQITSRTDVLDKFLSEGGISRYNPQIIA EGKAKPRFISLMSSVLGEESVINDINYLHTPDTVDDLKPVTQLLVVDIATKTGVKFLHEGIRYLIEGSKVSRLGVLFTASKDVDLPSLLFMKAFQITASQ YGHKEKVLMFLDHMSTYFEQNYIFTSSGSVESSQIFMDKIYELADANGLSLKAYKSALPESSIEDMTTYMSKVAQFLYRELRLESGVNAVITNGRVTIPS EGTFLSHDLQLLESVEYKQRIKHIVDIIEEVEWQDEDPDLLTSKFVSDVVMCISSAMATRERSSESARFEILNGDYSAVIIENEGSGVHIDAVIDPLSPT GQKVASLLNVLKKYIQPSMRLILNPLSSLVDLPLKNYYRYVVPAMDDFSSTDHTVPGPKAYFENMPLSKTLTMNLDVPEPWLIEPVIAVHDMDNILLENL GDTRTMQAVFELEALVLTGHCSEKDHEPPRGLQLILGTKSMPHFVDTIVMANLGYWQMKASPGVWYLQLAPGRSSELYALNEDGVGNEDRHLSKRINIDD FRGKVVHLEVVKRKGREHDKLLVPSDDDSQPHGREKGALDGWNSNFLKWASGIIGVNGKSKNNESDVVAKKGKGGRHGTTINIFSIASGHLYERFLRIMI LSVLKNTQRPVKFWFIKNYLSPQFKDVIPHMAEEYGFEYELITYKWPSWLHKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQIVRADMGELYDMDI KGRPLAYTPFCDNNKDMDGYKFWRQGFWKEHLRGRPYHISALYVVDLAKFRETAAGDNLRVFYETLSKDPNSLSNLDQDLPNYAQHTVPIFSLPQEWLWC ESWCGNATKSNAKTIDLCNNPMTKEPKLQGARRIVPEWVDLDSEARRFTAKILGEEEPEDSVVTTATTKQPETQNPSSRETEPETDLETKAEL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Lus10015475 [exp]	0	1
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Lus10019946 [exp]	1.0	0.9574
AT3G63460		EMB2221	transducin family protein / WD...		Lus10039578 [exp]	5.9	0.8927
AT3G13330		PA200	proteasome activating protein ...		Lus10008354 [exp]	6.5	0.9035
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005323 [exp]	11.7	0.9095
AT5G36000			unknown protein		Lus10035747 [exp]	13.6	0.8717
					Lus10016154 [exp]	15.3	0.8695
AT3G33530			Transducin family protein / WD...		Lus10019403 [exp]	15.9	0.8731
AT3G13330		PA200	proteasome activating protein ...		Lus10027111 [exp]	21.6	0.8926
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040531 [exp]	25.2	0.8969
AT1G30470			SIT4 phosphatase-associated fa...		Lus10038452 [exp]	25.9	0.8669

Compare expression of checked genes

Lus10015475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.