Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28600 310 / 3e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28580 306 / 1e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28610 303 / 1e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G27360 295 / 3e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28590 294 / 6e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28570 293 / 2e-94 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G31550 290 / 1e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28640 286 / 4e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28650 286 / 7e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28670 277 / 2e-88 ARAB-1 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019947 [exp] 415 / 3e-143 AT1G28580 300 / 5e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10013938 [exp] 287 / 4e-92 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000523 [exp] 286 / 4e-92 AT1G28590 363 / 6e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015477 [exp] 255 / 1e-78 AT1G28600 239 / 5e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10024085 [exp] 239 / 1e-73 AT1G31550 321 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10010208 [exp] 215 / 1e-64 AT1G28610 267 / 1e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10020657 [exp] 184 / 5e-50 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034763 [exp] 168 / 8e-47 AT3G48460 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10033302 [exp] 154 / 2e-41 AT3G48460 454 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054300 [exp] 346 / 3e-115 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G064100 [exp] 249 / 3e-80 AT1G28580 221 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G054400 [exp] 240 / 2e-74 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024966 [exp] 218 / 5e-66 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 218 / 5e-66 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 216 / 5e-65 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024900 [exp] 215 / 1e-64 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024300 [exp] 204 / 8e-61 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.001G463900 [exp] 177 / 2e-50 AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G015200 [exp] 163 / 3e-45 AT1G28590 213 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10015476 pacid=23173606 polypeptide=Lus10015476 locus=Lus10015476.g ID=Lus10015476.BGIv1.0 annot-version=v1.0 ATGCAGTCACTGCGGGTAGTTAATTGGTACGGGCGGACCCAATGCCCGTTTATATTGGTGACGGCTTGCGCCCTCCACTACGGCGAGACCTTCTTTCACC ATCCCACCAACCGTTATTCCGATGGACGTTTAGTCATCGATCTCATCGCTGAATATTTGGGGGTTCCGTTAGTAACCCCTTCTCTCGGGCAGCCGAGCAA CACCAATTTCAGTGCCGGCGCAAATTTCGCGGTGGCCGGTGCCACGATACTCGATTGTCTTACTCTTGAAAGCAAAGGGATCCTCTGTGATGCCAAGAAT ATCTCTTTGGATGTACAACTCGTCTCCTCACGCAAGAATCTGTGGGTGTTGGAAAGAAAACAAATACCAAATAATGGATCTAATAACATTTTCCCTGTCC ATTCTTCTCCTCCTCCTCCTCCTCTTATCAACCTTTTCTTCCCCCACCGCCACATCCACATGCTTCACTTCCATCATCAGCTTCGGCGATTCTATCGCCG ACACAGGGAATCTCTGCCAACTTTCCCCGCCGGACAACCTCCCCAACACGTGCTTTCCTCCCTACGGCGAAACCTTCTTCCGCCGCCCCACCGGCCGCAG CTGCAACGGCCCGGCCGCAGCTGCAACGGCCGTTTAGTCATCGACTTTATCGCGGAGCACGTGGGACTTCCGCTAGTGCCGGCGTACTTCGGCGGTAGCC GCGGGGATTTTGGTACCGGCGTAAATTTCGCGGTGGCGGGGGCGACGGCTCTGAGTATTGACTTATTGGAAAAGTTGGGGATACATAACCTTCCGACCAA TGTTACTTTGAGAGCTCAGCTGGATTTGTTCAGCAACCTCCTGCCGTCGATGTGTGGCTCCGACGACAGTTCAGGCAAATATATCGGTGGAGTTATTTTC ATGCTTGTTCTTGTGTTTGCCTCAAGCTATCTTTTTCTAATGGGAGAAATTGGAGGTAACGATTATAATTACCCACTGGACATGAGAATGAGCTTGGAAC AAGTACAGCAGCTCGTCCATATGGTGGTCGATTCTATCGGTTTGGCTATCAAGGACATAATTGAGTTAGGGGCAATACACATATTGGTTCCTGGAAATTT CCCAATTGGATGCTTACCCTTCATGCTGACCAACTTCCAGAGTTCAGACCCAGATGAATATGATCCTTCCACAGGCTGCATAACCTGGCTCAACCAGCTT GCTGAATTCCATAACGAATTGCTCCAATCTGAACTGGATCGCCTCCAACGACTTCACCCACATGCCAATCTAGTCTATGCCGATTACTACACTCCCCTGA TGAGCATCTATCGTTCTCCGGAACAATTCGGATTTACAGGTGGAGTTCTGAAAGCATGTTGTGGAAAGGGAGGACCTTACAACTACAATACATCGATCAG CTGTGGGAACCCATTGGTGAAGGCTTGTGAAGATCCGTCCACTTATGTTAATTGGGATGGGATTCATTTCACTGAAGCTACTTATAGGCTGGTGGCCAAG TCTATTTTGGAACAAGCATCTTTCAGTTTTAGTGCTTCTTCACCATCTAATTGTATTGCCAACGGCGCCCAATCATTCTGA
AA sequence Show only first row Show all	>Lus10015476 pacid=23173606 polypeptide=Lus10015476 locus=Lus10015476.g ID=Lus10015476.BGIv1.0 annot-version=v1.0 MQSLRVVNWYGRTQCPFILVTACALHYGETFFHHPTNRYSDGRLVIDLIAEYLGVPLVTPSLGQPSNTNFSAGANFAVAGATILDCLTLESKGILCDAKN ISLDVQLVSSRKNLWVLERKQIPNNGSNNIFPVHSSPPPPPLINLFFPHRHIHMLHFHHQLRRFYRRHRESLPTFPAGQPPQHVLSSLRRNLLPPPHRPQ LQRPGRSCNGRLVIDFIAEHVGLPLVPAYFGGSRGDFGTGVNFAVAGATALSIDLLEKLGIHNLPTNVTLRAQLDLFSNLLPSMCGSDDSSGKYIGGVIF MLVLVFASSYLFLMGEIGGNDYNYPLDMRMSLEQVQQLVHMVVDSIGLAIKDIIELGAIHILVPGNFPIGCLPFMLTNFQSSDPDEYDPSTGCITWLNQL AEFHNELLQSELDRLQRLHPHANLVYADYYTPLMSIYRSPEQFGFTGGVLKACCGKGGPYNYNTSISCGNPLVKACEDPSTYVNWDGIHFTEATYRLVAK SILEQASFSFSASSPSNCIANGAQSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10015476 [exp]	0	1
AT5G04020			calmodulin binding (.1)		Lus10035417 [exp]	6.0	0.6400
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10033575 [exp]	6.9	0.6454
AT5G04020			calmodulin binding (.1)		Lus10031023 [exp]	27.6	0.5907
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10035692 [exp]	42.1	0.6130
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10027621 [exp]	45.1	0.6296
AT4G12010			Disease resistance protein (TI...		Lus10015350 [exp]	52.8	0.6230
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10016777 [exp]	53.3	0.5662
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10014603 [exp]	68.9	0.6058
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023197 [exp]	71.8	0.5116
AT5G41920	GRAS		GRAS family transcription fact...		Lus10040734 [exp]	82.0	0.5938

Compare expression of checked genes

Lus10015476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.