Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31550 239 / 5e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28600 226 / 3e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28580 220 / 1e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28570 218 / 5e-67 SGNH hydrolase-type esterase superfamily protein (.1.2) AT2G27360 219 / 2e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28590 217 / 1e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28610 208 / 2e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28640 207 / 8e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28650 201 / 2e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28670 192 / 4e-56 ARAB-1 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013938 [exp] 295 / 2e-95 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000523 [exp] 291 / 2e-94 AT1G28590 363 / 6e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019947 [exp] 268 / 6e-86 AT1G28580 300 / 5e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015476 [exp] 254 / 2e-78 AT1G28600 315 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10024085 [exp] 194 / 5e-57 AT1G31550 321 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10010208 [exp] 183 / 8e-53 AT1G28610 267 / 1e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10033302 [exp] 172 / 4e-48 AT3G48460 454 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011338 [exp] 139 / 7e-37 AT1G28600 177 / 3e-53 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10020657 [exp] 139 / 6e-35 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054300 [exp] 233 / 4e-72 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054400 [exp] 229 / 1e-70 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G064100 [exp] 206 / 1e-63 AT1G28580 221 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.015G089700 [exp] 186 / 5e-54 AT3G48460 478 / 2e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024966 [exp] 170 / 3e-48 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 170 / 3e-48 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 169 / 9e-48 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024900 [exp] 164 / 5e-46 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024300 [exp] 164 / 9e-46 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.001G463900 [exp] 143 / 3e-38 AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10015477 pacid=23173680 polypeptide=Lus10015477 locus=Lus10015477.g ID=Lus10015477.BGIv1.0 annot-version=v1.0 ATGGCTGATCTAGTGGCTGAGAAGAATACAGCACATCCGAATTGGGGCATCATCAGAAGTGGGGCATCATCTTGTTTAGATGATGCTATTGCATGTCAAG TGATGGCTCAACAATTCGGCGATGGGGACCGCAGTATCAAAGAAGCTCCTGGATACATCAGAAATGATTCCTTATCCTCCGCAGCAAACCGCCCACAACC ACCACCAGTAGGATGCTTCAGCTCCATTTTCAGCTTCGGAGACTCCATCACCGACACCGGAAACCACTGCTACCTCTTATCCAAATCCGGCCATGGAAAA CTTCAAAACAACTGCTTTCTCCCCTACGGCGAAACCTTCTTCCACCGCCCCACCGGCAGCAGCTCCGACGGCCGTCTCATCATTGACTTTATCGCTGAGT ACTTGGGACTTCCGCTGGTACCGCCGTATTTTGGAGGAAGCAGTAACAATTTTGACGGGGGAGTGAATTTTGCGGTGGGAACTGCGACGGCGCTTGACAG TAACCTGCTGGGTGCAACACAAGGCACCAATGTTTCGTTGAGAGTTCAATTTGATTTGTTCAAGCAATTGTTGCCGTCGCTCTGTGGGAATAGTTACACC AACTCAGGCGAGTTCTCTTTACAGCAGACTATCAATTCATCTTGGCTGTATGGCTTCTCAAATAAGTTGATAATAGGCTTGGCAGCAGATATGTGGGTTT CGGATATTCGTTGGAGCCCGTTTGAATTGAGCCGATTTATGCCCATCAACCGTAGGTTTTTGTCGGTTTCGGGCACACCCGCGACCCGCCAAATTCGGGC GATGGATGGTCATGGATGCAAGGATCTCCTTAAGAAATCGTTATTTCTATTGGGAGAAATCGGAGGGAACGACTACAATTTCCCTTTAACCGACGGTTTT GGCTTCGAACAAGTTCAACAGCTAGTGCCCCTTGTTGTCCGTTGCATAACTTCCACTCTCCAGGAATTAATAGAATTGGGAGCGGTCAACATCCTAATCC CAGGGAACTTCCCAATTGGATGCCTACCCTTCTACCTTAACAAGTTGAAAAGTTCCAATTTGGAGGATTACGACCCATCAACTGGATGCCTCAACTGGCT CAACCAACTTGCATCGTACCACAACGAGCTTCTACAGTCTGAATTAAACAGTGTCAGAAAACTTCATCCCAACATCAACATTGTCTACGTTGACTACTAC AATGCTGCTCTGCGTATCTACCGTACTCCTACCCAATTCGGATTCGGCGCTGGTGAAACCCTCAAAGGATGCTGTGAGGGAGAAGGGTCTCGGGCGCAAT GTGGGAGCCCCTCGGTGAAGCCTTGCGACGATCCATCGAAATATGTGAGCTGGGATGGGCTGCATTTCACTGAAGCGACTTATGAATTAATTGCCAAGTC TATATTGGAACAAGGATTGTTCACTGATCCTCCTTTCAATGCTTTGGCCTCTTGCACTGCTACCAACTCGGACAAGTACTACTTTCCCAGTTGA
AA sequence Show only first row Show all	>Lus10015477 pacid=23173680 polypeptide=Lus10015477 locus=Lus10015477.g ID=Lus10015477.BGIv1.0 annot-version=v1.0 MADLVAEKNTAHPNWGIIRSGASSCLDDAIACQVMAQQFGDGDRSIKEAPGYIRNDSLSSAANRPQPPPVGCFSSIFSFGDSITDTGNHCYLLSKSGHGK LQNNCFLPYGETFFHRPTGSSSDGRLIIDFIAEYLGLPLVPPYFGGSSNNFDGGVNFAVGTATALDSNLLGATQGTNVSLRVQFDLFKQLLPSLCGNSYT NSGEFSLQQTINSSWLYGFSNKLIIGLAADMWVSDIRWSPFELSRFMPINRRFLSVSGTPATRQIRAMDGHGCKDLLKKSLFLLGEIGGNDYNFPLTDGF GFEQVQQLVPLVVRCITSTLQELIELGAVNILIPGNFPIGCLPFYLNKLKSSNLEDYDPSTGCLNWLNQLASYHNELLQSELNSVRKLHPNINIVYVDYY NAALRIYRTPTQFGFGAGETLKGCCEGEGSRAQCGSPSVKPCDDPSKYVSWDGLHFTEATYELIAKSILEQGLFTDPPFNALASCTATNSDKYYFPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10015477 [exp]	0	1
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10011476 [exp]	1.0	0.8454
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10026535 [exp]	2.4	0.8309
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10035859 [exp]	4.9	0.7924
AT1G07710			Ankyrin repeat family protein ...		Lus10015224 [exp]	5.3	0.7858
AT1G28580			GDSL-like Lipase/Acylhydrolase...		Lus10019947 [exp]	7.4	0.7560
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021718 [exp]	11.2	0.7466
					Lus10012740 [exp]	11.2	0.7853
AT5G56040			Leucine-rich receptor-like pro...		Lus10042090 [exp]	12.4	0.7714
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10038022 [exp]	12.6	0.7168
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10025538 [exp]	13.4	0.7588

Compare expression of checked genes

Lus10015477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.