Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51990 162 / 1e-46 Protein kinase superfamily protein (.1) AT5G23170 158 / 2e-45 Protein kinase superfamily protein (.1) AT1G28390 145 / 1e-39 Protein kinase superfamily protein (.1.2) AT3G59420 143 / 1e-37 ACR4 crinkly4 (.1) AT4G01330 138 / 8e-37 Protein kinase superfamily protein (.1.2) AT1G01540 134 / 2e-35 Protein kinase superfamily protein (.1.2) AT5G18500 134 / 3e-35 Protein kinase superfamily protein (.1.2) AT4G02630 132 / 8e-35 Protein kinase superfamily protein (.1) AT1G09440 130 / 3e-34 Protein kinase superfamily protein (.1) AT1G31420 131 / 5e-34 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019948 [exp] 361 / 1e-125 AT3G51990 174 / 3e-52 Protein kinase superfamily protein (.1) Lus10039770 [exp] 161 / 4e-45 AT1G28390 379 / 2e-127 Protein kinase superfamily protein (.1.2) Lus10016371 [exp] 159 / 2e-44 AT3G51990 402 / 3e-138 Protein kinase superfamily protein (.1) Lus10000764 [exp] 139 / 3e-36 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015956 [exp] 138 / 6e-36 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10036386 [exp] 134 / 3e-35 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007919 [exp] 134 / 3e-35 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10006215 [exp] 132 / 1e-34 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012995 [exp] 128 / 1e-34 AT5G47850 372 / 9e-125 CRINKLY4 related 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G010300 [exp] 233 / 3e-74 AT5G23170 270 / 3e-88 Protein kinase superfamily protein (.1) Potri.004G221800 [exp] 231 / 3e-73 AT5G23170 273 / 1e-89 Protein kinase superfamily protein (.1) Potri.005G158600 [exp] 166 / 7e-47 AT1G28390 397 / 3e-134 Protein kinase superfamily protein (.1.2) Potri.001G260800 [exp] 151 / 3e-42 AT3G51990 419 / 5e-146 Protein kinase superfamily protein (.1) Potri.009G055200 [exp] 149 / 1e-40 AT3G51990 409 / 7e-141 Protein kinase superfamily protein (.1) Potri.007G128400 [exp] 140 / 8e-37 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.017G029900 [exp] 136 / 2e-35 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.003G053301 [exp] 135 / 2e-35 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.001G183000 [exp] 132 / 2e-34 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.013G003700 [exp] 132 / 2e-34 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10015478 pacid=23173659 polypeptide=Lus10015478 locus=Lus10015478.g ID=Lus10015478.BGIv1.0 annot-version=v1.0 ATGTTGGGAGTTTTGGCATATGCATGTGAGATCCCCTGCATCAAGAAGGACTCTCAAATACAGAGGAGGCTGCCGAAAACAGAGATAGAAAGAACACTGG GAAACCCGACGAGAAAGAAGGTCTCCTTTGATCACGAATCCCACGTTGGTCATGCCAATTCCTTGAAGCTCCACGATGAGATACGTACTCTGTCTTCCTT GACACGAAGATTATGTCCGAATCCATACATCGTCAAATTCCTCCAAACGGAAAATTTTGATCCTGGTCACTATAACGACCGCCAGGATCAAGATTTGCTG GTCAAACAACTCTTGGTGATGGAGTTGTTGCCCAATGGCTCTCTCGACGACTTGTTACACGTTGGGCTTATGACTTCACCATCCGGTGGTGGTGGTCAAA GTCAACACTTGTCGTGGACCCAACACGTAGAGATCATCATTCAACTCGCAAAGGCAGTCGATTTTCTCCATCCGCATGTCGTTCACAGAGACATAAAGCC TTCCAACATCTTATTCGATTCGAGTAAAAAATTAAAGCTCGTTGATTTCGGACTCGCTGTGTCAAGTATTGACAACGACTCAGTGGTGACTCAACAACCG GCAGGTACCATTGGGTACATGGACCCGCATTATGCCACGCATGGCAAACTTACCACGAAAGTCGACGTCTACGGTTTCGGAGTGGTTCTATTTGAGATCA TCAGTAGTCGAAAGGCGATCGAGGTGACTCATTCCCCTGCATCGGTTGTTGAGTGGGCTGGGCCGATGATGAAAAAGCAGAGGCCCATGGAGATCTGCGA TCCAAAGGTGGCGTTACCCGAGTTCTTGGAGTGCACGATTAGGCACTTGTTGTATCTGGCGGCACGTTGTGTGCTGCCAAATTCCGAGGATAGACCCGAA ATGGGTGAAATCCTTCTCACGTTGGATGGACCCGGTTGCCTGATGATTCAAGAAATAAGTAAAATTACCTCTATTTCTATCTATATGCATTTTAATATAC TTGAGTTGATTCAAGACTAG
AA sequence Show only first row Show all	>Lus10015478 pacid=23173659 polypeptide=Lus10015478 locus=Lus10015478.g ID=Lus10015478.BGIv1.0 annot-version=v1.0 MLGVLAYACEIPCIKKDSQIQRRLPKTEIERTLGNPTRKKVSFDHESHVGHANSLKLHDEIRTLSSLTRRLCPNPYIVKFLQTENFDPGHYNDRQDQDLL VKQLLVMELLPNGSLDDLLHVGLMTSPSGGGGQSQHLSWTQHVEIIIQLAKAVDFLHPHVVHRDIKPSNILFDSSKKLKLVDFGLAVSSIDNDSVVTQQP AGTIGYMDPHYATHGKLTTKVDVYGFGVVLFEIISSRKAIEVTHSPASVVEWAGPMMKKQRPMEICDPKVALPEFLECTIRHLLYLAARCVLPNSEDRPE MGEILLTLDGPGCLMIQEISKITSISIYMHFNILELIQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51990			Protein kinase superfamily pro...		Lus10015478 [exp]	0	1
AT5G62040		BFT	brother of FT and TFL1, PEBP (...		Lus10005753 [exp]	3.2	0.7699
AT1G65870			Disease resistance-responsive ...		Lus10029306 [exp]	6.0	0.8259
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10017463 [exp]	32.0	0.6839
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	34.5	0.7636
AT4G35160			O-methyltransferase family pro...		Lus10018629 [exp]	36.0	0.7539
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10026515 [exp]	38.1	0.7684
AT3G29000			Calcium-binding EF-hand family...		Lus10026974 [exp]	41.2	0.7559
AT1G23850			unknown protein		Lus10014532 [exp]	49.5	0.7281
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Lus10001226 [exp]	55.1	0.7279
AT5G55530			Calcium-dependent lipid-bindin...		Lus10032578 [exp]	76.5	0.6806

Compare expression of checked genes

Lus10015478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.