Plant FIBer expression Database

Lus10015479 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G58100 42 / 0.0001 TCP TCP8 TCP domain protein 8, TCP family transcription factor (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019949
[exp]
149 / 7e-44 AT1G58100 89 / 3e-19 TCP domain protein 8, TCP family transcription factor (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G222100
[exp]
93 / 2e-22 AT1G58100 172 / 4e-48 TCP domain protein 8, TCP family transcription factor (.1.2)
Potri.013G110700
[exp]
41 / 0.0002 AT1G35560 224 / 9e-70 TCP family transcription factor (.1)
PFAM info
Representative CDS sequence
>Lus10015479 pacid=23173661 polypeptide=Lus10015479 locus=Lus10015479.g ID=Lus10015479.BGIv1.0 annot-version=v1.0
ATGCTTCCGGTGACTGCAGGCAGTGGAGGAGGCGGAGAAGTAGGAGGAGGAGGTGGCGGGCATCCGATGGTGACAACAGCGGGTCCGACGGAAGCTCAGA
TGTGGCCGTTTTCAACCAGTGCCGGGAACACGCCGCCGATTCAGGCGCCGTTACATTTCATGCCGAGATTCAACCTGCCGGCGCAGAATCTAGATTTCCA
AGGCGGGAGAGCAAGTCCTTTTCTGCTGGGGGGGATTGGGGTGCCACCGCCCCCGACAACGCCGGCGCGGTCGCCGCAATTGGGGTCGCAGCACTTGGGG
CTGGGGATGTCGGAATCGAACTTGGGGATGCTAGCTGCATTGAACGCTTATTCCAGAGGAGGGCTAAATGCCAGCTCGGAGCACAGCCATCATCATCACC
ATCAACAACAACAGCAGCAGCAGCAAACAAATAGTGAACATGATGATGACGAAGAAGAAGAAGAAGATCCGAATAGTTCTCAGTGA
AA sequence
>Lus10015479 pacid=23173661 polypeptide=Lus10015479 locus=Lus10015479.g ID=Lus10015479.BGIv1.0 annot-version=v1.0
MLPVTAGSGGGGEVGGGGGGHPMVTTAGPTEAQMWPFSTSAGNTPPIQAPLHFMPRFNLPAQNLDFQGGRASPFLLGGIGVPPPPTTPARSPQLGSQHLG
LGMSESNLGMLAALNAYSRGGLNASSEHSHHHHHQQQQQQQQTNSEHDDDEEEEEDPNSSQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G58100 TCP TCP8 TCP domain protein 8, TCP fami... Lus10015479
[exp]
0 1
AT5G53650 unknown protein Lus10008848
[exp]
6.2 0.8532
AT5G14440 Surfeit locus protein 2 (SURF2... Lus10022288
[exp]
17.0 0.8263
AT2G03190 ASK16 SKP1-like 16 (.1) Lus10031747
[exp]
24.4 0.8311
AT1G65520 PEC11, ECHIC, A... "delta\(3\), delta\(2\)-enoyl ... Lus10005159
[exp]
25.8 0.7918
AT1G31870 unknown protein Lus10033140
[exp]
38.4 0.8178
AT2G06210 VIP6, ELF8 VERNALIZATION INDEPENDENCE 6, ... Lus10000472
[exp]
40.3 0.8118
AT1G05205 unknown protein Lus10039669
[exp]
42.8 0.8065
AT5G53800 unknown protein Lus10003591
[exp]
45.2 0.8162
AT3G63095 Tetratricopeptide repeat (TPR)... Lus10028013
[exp]
51.1 0.7450
AT3G59990 MAP2B methionine aminopeptidase 2B (... Lus10005292
[exp]
51.5 0.8144

Lus10015479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.