Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71900 481 / 7e-172 Protein of unknown function (DUF803) (.1) AT1G34470 456 / 7e-162 Protein of unknown function (DUF803) (.1) AT4G09640 438 / 2e-154 Protein of unknown function (DUF803) (.1) AT4G13800 330 / 1e-112 Protein of unknown function (DUF803) (.1) AT2G21120 322 / 2e-109 Protein of unknown function (DUF803) (.1) AT3G23870 320 / 8e-109 Protein of unknown function (DUF803) (.1) AT4G38730 315 / 1e-106 Protein of unknown function (DUF803) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019952 [exp] 490 / 1e-175 AT1G71900 454 / 4e-161 Protein of unknown function (DUF803) (.1) Lus10006072 [exp] 404 / 5e-142 AT1G71900 503 / 0.0 Protein of unknown function (DUF803) (.1) Lus10010893 [exp] 339 / 3e-116 AT2G21120 416 / 8e-147 Protein of unknown function (DUF803) (.1) Lus10012716 [exp] 338 / 1e-115 AT2G21120 444 / 1e-157 Protein of unknown function (DUF803) (.1) Lus10026280 [exp] 319 / 1e-107 AT2G21120 498 / 2e-178 Protein of unknown function (DUF803) (.1) Lus10022549 [exp] 298 / 6e-100 AT4G13800 408 / 2e-143 Protein of unknown function (DUF803) (.1) Lus10042393 [exp] 269 / 3e-89 AT4G38730 424 / 2e-150 Protein of unknown function (DUF803) (.1) Lus10016636 [exp] 253 / 3e-83 AT3G23870 312 / 2e-106 Protein of unknown function (DUF803) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G009700 [exp] 508 / 0 AT1G71900 463 / 9e-165 Protein of unknown function (DUF803) (.1) Potri.019G084600 [exp] 443 / 4e-157 AT1G71900 423 / 5e-149 Protein of unknown function (DUF803) (.1) Potri.013G114100 [exp] 434 / 2e-153 AT1G71900 439 / 4e-155 Protein of unknown function (DUF803) (.1) Potri.001G318700 [exp] 369 / 1e-127 AT4G13800 379 / 8e-132 Protein of unknown function (DUF803) (.1) Potri.009G047400 [exp] 348 / 2e-119 AT1G34470 414 / 5e-145 Protein of unknown function (DUF803) (.1) Potri.001G253100 [exp] 344 / 9e-118 AT1G34470 379 / 6e-131 Protein of unknown function (DUF803) (.1) Potri.001G305700 [exp] 325 / 2e-110 AT2G21120 442 / 9e-157 Protein of unknown function (DUF803) (.1) Potri.019G001100 [exp] 322 / 3e-109 AT2G21120 433 / 5e-153 Protein of unknown function (DUF803) (.1) Potri.004G168900 [exp] 293 / 5e-98 AT2G21120 488 / 6e-175 Protein of unknown function (DUF803) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF05653 [flax] [poplar] Mg_trans_NIPA Magnesium transporter NIPA
Representative CDS sequence Show only first row Show all	>Lus10015480 pacid=23173582 polypeptide=Lus10015480 locus=Lus10015480.g ID=Lus10015480.BGIv1.0 annot-version=v1.0 ATGGAATCGGCTGAGCCTAGCTGGAGGGACTCTTACAAGGGGATGTCATCCGACAATATCAAGGGTTTGGTTTTGGCTCTCTCTTCCAGCTTCTTCATTG GTGCTAGCTTCATTGTCAAGAAGAAAGGCTTGAAAAAAGCAGGTGCCTCCGGTGTCAGGGCAGGAAGTGGGGGCTATTCATATCTTTATGAACCTCTATG GTGGATTGGCATGATAACAATGATTGTAGGAGAAATAGCTAACTTTGCCGCTTATGCGTTTGCACCTGCTATACTGGTCACTCCACTAGGTGCTCTGAGC ATCATCATCAGTGCTGTCCTTGCACACATTATTCTAAGAGAGAGGCTTCACATTTTTGGTGTTCTTGGTTGTGCTCTTTGTGTTGTGGGTTCCATTACAA TTGTCCTGCATGCTCCGCAAGAACGTGGAATTGAATCTGTGATAGAGGTCTGGAATCTTGCTACAGAACCTGCTTTTCTATTCTATGCAGCCTTGGTGAT CACTGCTGTCTTTGTACTCATATTCCAATTTATCCCTGACTACGGCCAGACTCATATTATGGTGTACATAGGAATATGCTCTCTTGTTGGCTCTTTGTCG GTCATGAGTGTTAAAGCACTTGGAATTGCAATAAAGTTGACATTATCAGGAATGAATCAGCTGATTTATCCCCAAACGTGGGCCTTCACATTGGTGGCAC TTGATACCTTTAACACTGCAGTGGTATCTCCTATTTACTATGTAATGTTCACATCGCTAACCATATTGGCTAGTGTTATAATGTTCAAGGATTGGGATAG GCAGAGCCCGACACAGATTGTTACTGAGATGTGTGGGTTTGTGACAATCTTATCAGGAACGTTTCTTCTTCACAAAACAAAAGATATGGCTGAGGGTTCA CCACCCCTACCAGTCCGACTTCCGAAGCATTCATCAGAAGAAGACGAGTGTGAGAGTGAAGGCATCCCTCTGAAGCGCCAAGACGCAATGCGGTCGACTT CTCATTGA
AA sequence Show only first row Show all	>Lus10015480 pacid=23173582 polypeptide=Lus10015480 locus=Lus10015480.g ID=Lus10015480.BGIv1.0 annot-version=v1.0 MESAEPSWRDSYKGMSSDNIKGLVLALSSSFFIGASFIVKKKGLKKAGASGVRAGSGGYSYLYEPLWWIGMITMIVGEIANFAAYAFAPAILVTPLGALS IIISAVLAHIILRERLHIFGVLGCALCVVGSITIVLHAPQERGIESVIEVWNLATEPAFLFYAALVITAVFVLIFQFIPDYGQTHIMVYIGICSLVGSLS VMSVKALGIAIKLTLSGMNQLIYPQTWAFTLVALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQSPTQIVTEMCGFVTILSGTFLLHKTKDMAEGS PPLPVRLPKHSSEEDECESEGIPLKRQDAMRSTSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71900			Protein of unknown function (D...		Lus10015480 [exp]	0	1
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	1.0	0.8861
AT5G52430			hydroxyproline-rich glycoprote...		Lus10027498 [exp]	2.2	0.8163
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Lus10039119 [exp]	5.1	0.7744
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10013357 [exp]	5.1	0.8583
AT1G71820		SEC6	SEC6 (.1.2)		Lus10020177 [exp]	7.3	0.8325
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	8.4	0.8028
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10017356 [exp]	8.8	0.7960
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10036540 [exp]	10.2	0.8203
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10011814 [exp]	11.8	0.8144
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022078 [exp]	12.5	0.8161

Compare expression of checked genes

Lus10015480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.