Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49940 255 / 2e-86 ATCNFU2, NFU2 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) AT4G25910 200 / 1e-64 ATCNFU3, NFU3 NFU domain protein 3 (.1) AT4G01940 97 / 1e-24 ATCNFU1, NFU1 NFU domain protein 1 (.1) AT1G51390 62 / 3e-11 ATNFU1, NFU5 NFU domain protein 5 (.1) AT3G20970 62 / 4e-11 ATNFU2, NFU4 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001439 [exp] 200 / 2e-64 AT4G25910 263 / 2e-89 NFU domain protein 3 (.1) Lus10001634 [exp] 199 / 4e-63 AT4G25910 260 / 7e-87 NFU domain protein 3 (.1) Lus10019952 [exp] 136 / 2e-38 AT1G71900 454 / 4e-161 Protein of unknown function (DUF803) (.1) Lus10009999 [exp] 111 / 6e-30 AT4G01940 257 / 8e-87 NFU domain protein 1 (.1) Lus10043440 [exp] 60 / 2e-10 AT3G20970 383 / 1e-134 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) Lus10034140 [exp] 57 / 5e-10 AT3G20970 369 / 3e-131 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G222600 [exp] 294 / 1e-101 AT5G49940 293 / 3e-101 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Potri.003G009300 [exp] 291 / 1e-100 AT5G49940 279 / 1e-95 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Potri.006G165600 [exp] 206 / 4e-67 AT4G25910 300 / 3e-104 NFU domain protein 3 (.1) Potri.002G192200 [exp] 109 / 3e-29 AT4G01940 263 / 1e-89 NFU domain protein 1 (.1) Potri.014G117700 [exp] 95 / 7e-24 AT4G01940 248 / 1e-83 NFU domain protein 1 (.1) Potri.010G237400 [exp] 67 / 4e-13 AT3G20970 366 / 2e-128 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0232 [flax] [poplar] NifU PF01106 [flax] [poplar] NifU NifU-like domain
Representative CDS sequence Show only first row Show all	>Lus10015481 pacid=23173583 polypeptide=Lus10015481 locus=Lus10015481.g ID=Lus10015481.BGIv1.0 annot-version=v1.0 ATGGTGGTAAACCCAGTTTGCTGCTCCGCACAACAAACCCTAGACCCTCCTTCTTCTCCTTCTTTTCTCCGTCAACCTCGTTCCTGGAAGGATTCCAGCT CCTTTGGGAGTACAGTTTCCATTAGCAGGGGATTCAATCGCCCGCAGGGCATATCATGTCAGACACCTGCCCTATCACGGAGACTAGTTGTTAAAGCAGT CACTACTCCGGATTCGGCCGTTGAATTGCCTTTAACTGCAGAGAATGTTGAGAGTGTTTTGGACGAGATTCGACCATATCTCATGGCTGATGGGGGTAAT GTGGTGTTGCACGAGATTGATGGAAATGTTGTTAAGTTGAAGTTACAAGGAGCCTGCGGGTCATGTCCTAGCTCTGTTGTGACAATGAAGATGGGAATAG AACGTAGATTAATGGAGAAAATCCCTGAAATCGTTGCAGTAGAACCTATAGCAGATGAAGAAACTGGGCTAGAGCTGAACGAAGAAAACGTAGAGAAGGT ACTAGAAGAGATAAGGCCGTATCTAGTGGGGGCAGCTGGAGGGACACTTGAACTAGTGACAATTGAAGAGCCAATAGTAAAAGTTAGAATCACAGGACCA GCAGCTGGAGTGATGACTGTTCGGGTGGCTGTTACGCAGAAGTTGCGTGAGAAAATACCATCAATCGCCGCAGTTCAACTTCTGTGA
AA sequence Show only first row Show all	>Lus10015481 pacid=23173583 polypeptide=Lus10015481 locus=Lus10015481.g ID=Lus10015481.BGIv1.0 annot-version=v1.0 MVVNPVCCSAQQTLDPPSSPSFLRQPRSWKDSSSFGSTVSISRGFNRPQGISCQTPALSRRLVVKAVTTPDSAVELPLTAENVESVLDEIRPYLMADGGN VVLHEIDGNVVKLKLQGACGSCPSSVVTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEENVEKVLEEIRPYLVGAAGGTLELVTIEEPIVKVRITGP AAGVMTVRVAVTQKLREKIPSIAAVQLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Lus10015481 [exp]	0	1
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10002383 [exp]	1.0	0.9071
AT3G17020			Adenine nucleotide alpha hydro...		Lus10016900 [exp]	1.4	0.8852
AT4G09620			Mitochondrial transcription te...		Lus10028701 [exp]	2.0	0.8698
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Lus10006111 [exp]	3.0	0.8498
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10003421 [exp]	3.9	0.8768
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10019480 [exp]	5.0	0.8683
AT3G45620			Transducin/WD40 repeat-like su...		Lus10034751 [exp]	7.3	0.8641
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10001821 [exp]	7.5	0.8502
AT4G37440			unknown protein		Lus10014864 [exp]	7.7	0.8476
AT1G70480			Domain of unknown function (DU...		Lus10029147 [exp]	8.0	0.8346

Compare expression of checked genes

Lus10015481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.