Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58070 68 / 4e-13 unknown protein AT1G75720 42 / 0.0001 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019953 [exp] 269 / 2e-90 AT1G58070 99 / 3e-24 unknown protein Lus10028461 [exp] 41 / 0.0006 AT2G17940 104 / 3e-27 Plant protein of unknown function (DUF827) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G222800 [exp] 102 / 4e-26 AT1G58070 60 / 1e-10 unknown protein Potri.003G009400 [exp] 82 / 1e-18 AT1G58070 48 / 1e-06 unknown protein Potri.019G021000 [exp] 49 / 6e-07 AT1G75720 42 / 8e-05 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.002G023000 [exp] 42 / 0.0002 AT1G75720 108 / 2e-29 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.005G238500 [exp] 41 / 0.0003 AT1G75720 82 / 3e-19 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.005G114400 [exp] 40 / 0.0007 AT2G17940 111 / 2e-30 Plant protein of unknown function (DUF827) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015482 pacid=23173600 polypeptide=Lus10015482 locus=Lus10015482.g ID=Lus10015482.BGIv1.0 annot-version=v1.0 ATGGACGTCGACACCGCCGACGATAGTGCTACTAGCAATGGCGACGGCTGGCCAAAAATAATCAGCAAACGCAACTCCTCCTCCGTGGACACTTCCCGCC CATTCAACTCCGTCAAGGAAGCCGTGGCCATCTTCGGCGAACGCATCCTCGTGCCTGGAATTTACCACTCTAGCCCCCTTCCTCCTCCTACTACCACCTC TCCCTCCTCCTGGAAGTCCGCCTCCGCTTCCGCTTCCCCTTTTAACAGTTATTCCTCTTTTACCCCTACCAATCATAATAATAATACCATCATCCCTGAT GATCACCATCATCAACAACAAGGTTTTTCAAACGACGACGTAGCGATTATGGAGACCGTGAAGAAGCTGGAAGCCGATCTGGAAGAGACCAAGGCAGAGC TCAAGCAGCTCAAGGAGAGAGGCTGCGAGACCGAGATCGCGCTGGCTTCCTTGAACGCCGAGCTCCACAAGAACATGTCTAAGCTGGCACAGGCCGAGGC AGACGCCGCCAGGAAGGCTGCGGACGACAAGATGGCAGCGGCGGTGGTAGCCGAGGTGAACTCGCCGACATTGGCTCAGATATTGAACCTTGGAGCGGAG TTGGAGAGTGGTGGGTATTATAGTAATTTCGGGTGGAATTACAAGACAACGAAGGCGGCGGCGGCGGAGAGTAACGGCTGGAATACGAAGAAGAAGAAGA AGAAGAAGCCGATTGTTCCTTTAGTTGGGGATTTTCTTTGGATGAATAAGAAGAAGAACAGTAGCAAGTCTGATCATAACAACCCACTTTATGCATCTCC TAATATTTTCTGA
AA sequence Show only first row Show all	>Lus10015482 pacid=23173600 polypeptide=Lus10015482 locus=Lus10015482.g ID=Lus10015482.BGIv1.0 annot-version=v1.0 MDVDTADDSATSNGDGWPKIISKRNSSSVDTSRPFNSVKEAVAIFGERILVPGIYHSSPLPPPTTTSPSSWKSASASASPFNSYSSFTPTNHNNNTIIPD DHHHQQQGFSNDDVAIMETVKKLEADLEETKAELKQLKERGCETEIALASLNAELHKNMSKLAQAEADAARKAADDKMAAAVVAEVNSPTLAQILNLGAE LESGGYYSNFGWNYKTTKAAAAESNGWNTKKKKKKKPIVPLVGDFLWMNKKKNSSKSDHNNPLYASPNIF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58070			unknown protein		Lus10015482 [exp]	0	1
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	1.0	0.9966
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043156 [exp]	1.4	0.9934
AT1G05060			unknown protein		Lus10030021 [exp]	2.2	0.9821
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10038014 [exp]	2.4	0.9866
AT5G26330			Cupredoxin superfamily protein...		Lus10021925 [exp]	2.8	0.9855
					Lus10004651 [exp]	4.9	0.9787
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10030282 [exp]	4.9	0.9790
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10025898 [exp]	5.7	0.9751
AT1G02570			unknown protein		Lus10010004 [exp]	7.7	0.9742
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10041596 [exp]	10.6	0.9789

Compare expression of checked genes

Lus10015482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.