Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28540 743 / 0 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 743 / 0 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G09080 711 / 0 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G12580 640 / 0 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G02500 628 / 0 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT1G16030 628 / 0 HSP70B heat shock protein 70B (.1) AT3G09440 627 / 0 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G56410 627 / 0 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G02490 624 / 0 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT5G09590 462 / 4e-155 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022375 [exp] 791 / 0 AT5G28540 767 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10020977 [exp] 785 / 0 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017022 [exp] 746 / 0 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10023043 [exp] 731 / 0 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10017306 [exp] 720 / 0 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10003202 [exp] 680 / 0 AT5G42020 1133 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10028061 [exp] 677 / 0 AT5G28540 664 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10021345 [exp] 674 / 0 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10029103 [exp] 640 / 0 AT5G28540 615 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018000 [exp] 758 / 0 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.003G143600 [exp] 741 / 0 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G087500 [exp] 739 / 0 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 737 / 0 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.010G206600 [exp] 641 / 0 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205700 [exp] 639 / 0 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 638 / 0 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.001G042600 [exp] 635 / 0 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 633 / 0 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 633 / 0 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10015483 pacid=23173590 polypeptide=Lus10015483 locus=Lus10015483.g ID=Lus10015483.BGIv1.0 annot-version=v1.0 ATGACCAACGGTGGAGAAGTGGTGATAGGAATTGATCTGGGGACTACATTCTCCTGTGTTGCCGTTGAACGAAATGGAATGATTGAAATCATCGCCAACG ACCAAGGCAACCGAATCACCCCTTCCTTTGTGGCCTTCTCTGCCGCAGAAGAAGACTCCTCATCAGAGCGTCTCATTGGAGAAGCCGCCAAGAATCAGGC AACTCTCAACCCTCTCCGTACAATCTTTGACGTCAAGCGGCTCATAGGGAAGAAGTTTGAGGATCCAGAGGTTCAGAGTGATTTGAAGTATCTGCCATAT CCTGTCGTCTCCAAAGAAGGAAAGCCGTGCGTGGAAATAGAAGTAGTCAAAGGAGAAGTGAAGGCATTTAGTGCGGAAGAGATCAGTGCTATGGTGCTGT CCAAAATGAAGGACACGGCGGAATCTTACCTCGGAAAGCCTGTCACTGGTGCTGTCGTAACTGTTCCTGCTTACTTCAACAATGCTCAGAGGCAAGCTAC CAAAGACGCAGGAAAAATTGCTGGGCTCAACGTGCAGCGGATAATAAATGAACCAACTGCTGGCGCATTAGCCTACGGCTTGATCGATGGGAGCTGGGAC AAGAAGGGGAAAATACTAGTGTACGATCTAGGGGGAGGAACATTTGATGTCAGCATACTGGAAATTGAGAATGATGTATTCCAAGTACTGTCCACCGGTG GCGACACTCATTTGGGTGGGGGAGATTTCGATCAAAGAGTGATGGAGCATTTCATTCAGCTGATAAAGAGAAAGTACAAGAAAGATATCAGTGGAGAAAG CAAGGCACTGGGGAGGCTACGTAGGGAATGCGAGAGGGCAAAAAGGGTGCTCAGTACTCAGACACAAGCCAGGATTGAGATCGATTCCCTTTTTCAGGGT ATGGACTTCTCGGAGCCATTTTCGAGGGCGAAGTTTGAAGAGTTGAATCTGGAGCTCTTCAACAAGACGCTGGAGGTAGTGAAGACGACCATGGAGGACG CAAAACTGAACAAAAGCGAAATCGACGAGATTGTGCTGGTTGGTGGAAGCACTAGGATTCCCAAGGTGAGGGATATGTTGAGAGAGATGTTCGATGGGAA GGAGCCGTGCAAGGGGGTTAACCCTGATGAAGCCGTTGCTTACGGTGCTGCTGTTTTGGGAGCCCAGCTCAGTGGCAAATCTGCTAATAATGGATATGGT TTTGCTCTGTTTGATGTTACACCTTTGAGTTTGGGTGTCAGAGTTTATGGTGGTTTGATGTCGATAGTGATTCCAAGAAACTCTACTGTTCCTGCAAATA TGTCGAGCAATTATACAACCGTTGATGACCAGCAAACTTCTCTTCCTTTCACGGTATTCCAAGGTGAAAGAGCTCTGACTAAAGACTGTTTGGAACTCGG AAGTTTTACGCTAACTGACATTCCACCGGCTCCAAGGGGAGTTGCATCAGTCAATGTTACGTTCGATATTGATGTTGATGGAATTCTAAGCGTAACAGCT GAGGATAGATCAACTCAGAATTCGCAATGCATCACAATCATGAGCTACACAGGGAGTTTGAGTCAACAAGAAGTTAACAGAATGGTGACGGAGGCAAAGG TAATGGCTGCACGTGACCAGAAGGAGAAGACACGTATAGAAACAAGGAATCATTTCGAGGGATACATCAATGATGTGAAGAATGCTTCGAGTAATATCAT AGACCTTGATGATAAATCGAAAGTGCTGAGTGCGTTGAAAGAAGCTACAGAGTGGTTGGATATCAACGAGAGAGCTTATAAGGAAGACTATGATCGAGAA ATGCAGAAACTTACTGATGTGTGGAATCCTATTATAAGAAATGTTTATGGCGCCGCCAAATGA
AA sequence Show only first row Show all	>Lus10015483 pacid=23173590 polypeptide=Lus10015483 locus=Lus10015483.g ID=Lus10015483.BGIv1.0 annot-version=v1.0 MTNGGEVVIGIDLGTTFSCVAVERNGMIEIIANDQGNRITPSFVAFSAAEEDSSSERLIGEAAKNQATLNPLRTIFDVKRLIGKKFEDPEVQSDLKYLPY PVVSKEGKPCVEIEVVKGEVKAFSAEEISAMVLSKMKDTAESYLGKPVTGAVVTVPAYFNNAQRQATKDAGKIAGLNVQRIINEPTAGALAYGLIDGSWD KKGKILVYDLGGGTFDVSILEIENDVFQVLSTGGDTHLGGGDFDQRVMEHFIQLIKRKYKKDISGESKALGRLRRECERAKRVLSTQTQARIEIDSLFQG MDFSEPFSRAKFEELNLELFNKTLEVVKTTMEDAKLNKSEIDEIVLVGGSTRIPKVRDMLREMFDGKEPCKGVNPDEAVAYGAAVLGAQLSGKSANNGYG FALFDVTPLSLGVRVYGGLMSIVIPRNSTVPANMSSNYTTVDDQQTSLPFTVFQGERALTKDCLELGSFTLTDIPPAPRGVASVNVTFDIDVDGILSVTA EDRSTQNSQCITIMSYTGSLSQQEVNRMVTEAKVMAARDQKEKTRIETRNHFEGYINDVKNASSNIIDLDDKSKVLSALKEATEWLDINERAYKEDYDRE MQKLTDVWNPIIRNVYGAAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10015483 [exp]	0	1
					Lus10034388 [exp]	14.7	0.7758
AT5G48290			Heavy metal transport/detoxifi...		Lus10025182 [exp]	19.6	0.7757
AT2G42005			Transmembrane amino acid trans...		Lus10013835 [exp]	20.9	0.7665
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10037792 [exp]	29.1	0.7040
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10020687 [exp]	32.1	0.7292
AT1G32900		GBSS1	granule bound starch synthase ...		Lus10008279 [exp]	35.1	0.6937
AT3G56290			unknown protein		Lus10029051 [exp]	41.9	0.7244
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014698 [exp]	46.3	0.6953
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10008894 [exp]	64.2	0.6993
					Lus10002411 [exp]	66.5	0.6960

Compare expression of checked genes

Lus10015483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.