Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23950 853 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G30520 845 / 0 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT5G16000 754 / 0 NIK1 NSP-interacting kinase 1 (.1) AT3G25560 729 / 0 NIK2 NSP-interacting kinase 2 (.1.2.3) AT1G60800 609 / 0 NIK3 NSP-interacting kinase 3 (.1) AT5G45780 547 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G33430 506 / 7e-173 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT1G71830 503 / 2e-171 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT2G13790 491 / 7e-167 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 461 / 1e-155 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019963 [exp] 1197 / 0 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034350 [exp] 759 / 0 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10005103 [exp] 742 / 0 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1) Lus10019145 [exp] 723 / 0 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 721 / 0 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10030591 [exp] 689 / 0 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10030898 [exp] 687 / 0 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10007292 [exp] 547 / 0 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029241 [exp] 508 / 4e-174 AT5G45780 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179400 [exp] 920 / 0 AT2G23950 889 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G101300 [exp] 896 / 0 AT4G30520 837 / 0.0 SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) Potri.017G108000 [exp] 768 / 0 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.004G108200 [exp] 766 / 0 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.008G110300 [exp] 752 / 0 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.010G134100 [exp] 738 / 0 AT3G25560 927 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.010G043200 [exp] 665 / 0 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.008G188800 [exp] 659 / 0 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.004G059100 [exp] 561 / 0 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G068700 [exp] 558 / 0 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015484 pacid=23173691 polypeptide=Lus10015484 locus=Lus10015484.g ID=Lus10015484.BGIv1.0 annot-version=v1.0 ATGGCTTCCAAACAGTTCCTTCTTCTTCTTCTTCTCACTCTTTTTATCCATTATCCACTCTGTTCCTCCTACGAGACTCGCAACCATGAAGTTGAGGCTT TGATCAGACTCAAGGAAGGGTTGGATGACCCCCATGGAGTTTTGAAGAACTGGGATGAAGACTCTGTTGACCCTTGTAGCTGGGCTATGATCACTTGCTC CCCTGACTATCTTGTCATTGGCTTGGGAGCTCCTAGTCAATCTCTCTCTGGAACTCTGTCTGCTGCTATTGGGAACCTCACCAATCTGCGCCAAGTGTTG TTGCAGAACAACAACATCTCTGGCAAAATCCCACTAGAGATTGGGCAACTTTCAAAGCTTCAGACTTTGGACCTCTCCAACAACCGTTTCTCTGGTTCAG TTCCAGATTCTTTCGGTCAGCTAATCGGCCTCCAGTACCTGAGGCTGAACAACAATAGCTTCTCTGGCCCTTTCCCACTGTCCTTAGCCAAAATCCCACG GCTTGCTTTCTTGGACTTGTCTTATAACAATCTGAGTGGACCAGTTCCCAAGTTTCCCACAAGAACATTCAATGTGGTTGGTAACCCACTGATATGTGGA AGCAAGTTCAGTGATGGATGTTTTGGGCCAGTCAATTCTAGTCCTCTCCCTTTCTCTCTTGATTCATCTCCTGGAAAGCACAAGTCCAAGAACATTGGAG TTGCTGTGGGAGTTAGTCTTGGTTCAATATCTTTCTTGGTTCTGGTTCTTGGGCTCCTCTGGTATAGAAAGAGGCAAAGAAGCCAAATTGTGCTAAACAT TAACGACAAACAAGAAGAGGGACTAATAAGCTCAGGGAACCTGAGAAACTTCAGCATCAGAGAGCTCCAGCATGCCACTAGCAACTTCAGCTCGAAGAAC TTACTTGGTGCTGGAGGGTTTGGCAATGTGTACAAGGGGAAGTTAGGAGATGGATCGACCGTGGCTGTGAAACGTCTCAAGGACTTGACAGGAAGCTCTG GCGAGTCTCAATTCAGGACCGAGTTGGAAATGATCAGCCTTGCCGTTCACCGAAATCTGCTCCGGCTGGTTGGATATTGCGCCACTGCTAATGAGAGGCT CTTGGTCTATCCTTACATGTCCAACGGCAGTGTGGCCTCAAGGCTTAGAGGAAAACCGGCATTGGATTGGAACGCAAGGAAGAGGATAGCAATTGGGGCA GCTAGGGGTCTTTTATATCTCCATGAGCAATGTGACCCTAAGATCATTCACCGAGACGTGAAGGCTGCCAATGTGCTACTTGATGACTACTGTGAGGCAG TGGTTGGCGATTTCGGACTCGCTAAGCTCCTTGACCATGCCGATTCGCATGTAACAACTGCAGTTCGTGGCACGGTGGGACACATTGCGCCAGAGTATCT CTCCACTGGCCAATCTTCTGAGAAGACAGATGTGTTTGGGTTTGGTATCTTGCTGATAGAGCTCATTACAGGAATGAGAGCCCTCGAGTTTGGGAAGAGT GTCAATCAGAAAGGAGCCATGCTTGAATGGGTAAAGAAGATACAGAAGGAGAAAAGAGAGGAAGAGTTGGTGGACAGAGAGCTGAGGAGCAGCAGCTATG ATGGGATTGAAGTTGGTGAGATGCTGCAAGTAGCAGTGCTATGTACTCAATACCTTCCATCTCACCGTCCGAAAATGTCTGAAGTGGTCCGGATGCTTGA AGGGGACGGCCTAGCTGAGAAATGGGCAGCTTCCCACAATCATACTACTGATCCCACCACCACCATGAACAATGTCTACAGCAGGACCACCATTACTGTA TTTGAAAATGGAAGCCTTGATCGGTCGAGTAGCTGCATGCTTGGCATGTCGATGGCTGATGATGATGACGATGATGATGAACGCTCCTTGGATTCCTATG CCATGGAGCTCTCTGGTCCTAGGTAA
AA sequence Show only first row Show all	>Lus10015484 pacid=23173691 polypeptide=Lus10015484 locus=Lus10015484.g ID=Lus10015484.BGIv1.0 annot-version=v1.0 MASKQFLLLLLLTLFIHYPLCSSYETRNHEVEALIRLKEGLDDPHGVLKNWDEDSVDPCSWAMITCSPDYLVIGLGAPSQSLSGTLSAAIGNLTNLRQVL LQNNNISGKIPLEIGQLSKLQTLDLSNNRFSGSVPDSFGQLIGLQYLRLNNNSFSGPFPLSLAKIPRLAFLDLSYNNLSGPVPKFPTRTFNVVGNPLICG SKFSDGCFGPVNSSPLPFSLDSSPGKHKSKNIGVAVGVSLGSISFLVLVLGLLWYRKRQRSQIVLNINDKQEEGLISSGNLRNFSIRELQHATSNFSSKN LLGAGGFGNVYKGKLGDGSTVAVKRLKDLTGSSGESQFRTELEMISLAVHRNLLRLVGYCATANERLLVYPYMSNGSVASRLRGKPALDWNARKRIAIGA ARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKS VNQKGAMLEWVKKIQKEKREEELVDRELRSSSYDGIEVGEMLQVAVLCTQYLPSHRPKMSEVVRMLEGDGLAEKWAASHNHTTDPTTTMNNVYSRTTITV FENGSLDRSSSCMLGMSMADDDDDDDERSLDSYAMELSGPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23950			Leucine-rich repeat protein ki...		Lus10015484 [exp]	0	1
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10040137 [exp]	2.6	0.8871
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	3.2	0.9297
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	4.0	0.9196
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10016110 [exp]	5.7	0.9092
AT4G00820		IQD17	IQ-domain 17 (.1)		Lus10023233 [exp]	8.7	0.8941
AT3G22810			Plant protein of unknown funct...		Lus10009509 [exp]	8.8	0.8694
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10021452 [exp]	9.2	0.8951
AT2G39870			unknown protein		Lus10040247 [exp]	11.2	0.8898
AT1G21090			Cupredoxin superfamily protein...		Lus10028576 [exp]	12.0	0.8675
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10039460 [exp]	12.7	0.8371

Compare expression of checked genes

Lus10015484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.