Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23890 792 / 0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) AT4G30490 662 / 0 AFG1-like ATPase family protein (.1) AT4G28070 659 / 0 AFG1-like ATPase family protein (.1.2) AT2G25530 179 / 5e-47 AFG1-like ATPase family protein (.1) AT5G48960 147 / 1e-36 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) AT1G75210 136 / 6e-33 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019962 [exp] 1899 / 0 AT2G23890 859 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Lus10002025 [exp] 175 / 7e-46 AT2G25530 810 / 0.0 AFG1-like ATPase family protein (.1) Lus10032712 [exp] 131 / 2e-31 AT1G75210 900 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G100600 [exp] 813 / 0 AT2G23890 871 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Potri.018G100900 [exp] 696 / 0 AT4G28070 713 / 0.0 AFG1-like ATPase family protein (.1.2) Potri.006G252300 [exp] 177 / 1e-46 AT2G25530 777 / 0.0 AFG1-like ATPase family protein (.1) Potri.014G196700 [exp] 130 / 3e-31 AT1G75210 869 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Potri.008G205900 [exp] 129 / 9e-31 AT5G48960 910 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Potri.010G002900 [exp] 129 / 1e-30 AT5G48960 902 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF03969 [flax] [poplar] AFG1_ATPase AFG1-like ATPase CL0137 [flax] [poplar] HAD PF05761 [flax] [poplar] 5_nucleotid 5' nucleotidase family
Representative CDS sequence Show only first row Show all	>Lus10015485 pacid=23173686 polypeptide=Lus10015485 locus=Lus10015485.g ID=Lus10015485.BGIv1.0 annot-version=v1.0 ATGAGAAGAAGTATTCGATCTGTACGGCACTTAGTTTCTGCTGTTGGGACTAAAGAATCGACCAACTCCTCAGCTGGTTTGGTGGGAATAAGAACAAGGC AGCAGAAGTTGATACAAACAACATCTGCTTCTTCTCTTGACACTGACAGATTTCAGAACAGGAAATTTGCCAACTTTAGGACTCTGGCAACTGATGCTGC TGCTACTGTGACAAATTCAGATCTGCGGATAGCAGGGCCTCTTGTGGAGTATCAAAGAAGGATTGCTTCTGGAGATCTTGTGGATGGTGATAACTACCAG TTACGAACTTTGACTGAACTTCAAAGGCTCTTTGATGAGATTGTTGAGTCTGCTGATGCCTGCAAATTGGATCGGTATGCTACGTCTGAGAAATCTACGA GGAAACGGTGGTTGTGGTCTCGATTCATCCCACAGTCTTCATATTCTCCTGTTAGAGGACTGTATCTTTATGGAGGTGTTGGGACCGGGAAGACCATGTT GATGGATTTGTTCTATGATCAATTGCCTTGCAGTTGGAGGAAAAAGAGGATCCACTTTCATGACTTCATGTTGAATGTCCATAGCCGCTTGCAAAGACAT AGGGGTGTGGCGGATCCACTTGAAGTTGTTGCAGGGGAGATCTCTGACGAGGCAATTCTTTTATGTTTAGATGAATTCATGGTGACTGATGTTGCTGATG CGTTGATACTAAATCGCCTCTTTGGACATCTATTCAACAATGGTGTTATTCTTGTTGCAACATCAAACCGTAACCCAGATAAGCTATATGAAGGTGGATT GCAAAGGGATCTCTTTCTGCCTTTCATTGAAACTCTGAAGGGGAGATGTGTAGTTCGTGAAATCGGCTCATCAGTAGACTACCGAAAATTGGGTTCGGCT GAGCAAGGGTTCTACTTCGTTGGGAATAATATAGCTGGCCTCCTAAAGCAGAAGTTTCAGGAATTGGTAGGCAAGCACGAGGTTAGATCAGAAGAGGTTG AAGTAGTAATGGGAAGAAAATTGCAGGTCCCATTTGCTGCTGATGGATGTGCATACTTCAAATTTGAAGAACTGTGTGATAGACCCCTTGGAGCTGCAGA TTATTTTGGATTGTTCAAGAGTTTCCATACATTGGCATTGGAAGGTATCCCAATCTTGGGGCTTAACAACAGAACAGCAGCGTATCGATTTGTCACGTTA ATTGATGTCATGTACGAGAACAGGGCGAGACTGCTGTGCACAGCAGAAGGTACTCCATTCGAACTTTTTGAGAAGATTGTTACAATTGCTGATGCGCAGC AAATGGCACCGAGGACCTCCGGAAGGTCGAGGAGAAACGACGAGGCTGATCTTTGCGTGGATAACGAGCTTGGCTTTGCTAAAGATCGAACCATTAGTAG GCAAAGAGCGTGCTTTTCTCTGCTGGCTATACGAGAAGGTTTTGGAGGGAATTTTAGGAGTTACAGTATTGCTGCTAGTGCTTCGGCTGAAGGACTGAAA TCTGAAGGTTCAGATTTTGATGATGAAGTTGCGAAGATTGGACACCAGTTTGAGGCAGCAAAGAATAGTTTTCTTTCTGTTCCCGAGTCGCTTGCTGGCA TGCCTAAGATGAATCCTAAAGGCATCTATGTGAATAAGAATCTTAGATTAGATAACATTCAAGTTTACGGATTCGACTACGACTATACATTAGCCCATTA CTCTTCCAACTTGCAGAGTTTGATATATGATCTTGCTAAGGAGCATATGGTGAATGAGCGTAGATACCCTGAGATATGCATGAGGTTCACATATGATCCT ACATTTCCCATTAGAGGCTTATACTATGACAGGAAGAACGGGTGCCTTTTGAAGCTGGATTTCTTTGGGTCAATTGAGCCAGATGGATGCTACTTCGGTC GACGCAAGCTTAGCAGGAAGGAAATAGAAGAGATATATGGCACAAGGCATATTGGTCGTGACCAAGCACGTGGACTCGTTGGTCTAATGGATTTCTTCTG CTTTAGTGAGGCATGCCTTATCGCAGATATTGTCCAACACTTTGTAGATGCTAAGCTAGAATTTGATGCATCTTACATCTATCAAGATGTAAACCGTGCC ATTCAGCATGTTCATCGAAGCGGGTCAGCTCATAGGGGCATCCTTTCCAATCCACAAAAGTATCTGCTGAAAAATGTGAGTAAGATGCGTTATATGCTGG AGGATTCCATTGGTTGCGGAGACTCCTGGAGAGACCTCTTTGATGTGGTGATTGCTAAAGCCAATAAGCCAGACTTCTACACTTCTGAGCACCCATTTCG ATGCTATGACACAGAAAGGGACACTCTGGCTTTTACAAAGGTGGAGACTTTCGTACAGGATAAAATCTATTACCATGGATGCCTTAAAACCTTTCTTGAA ATTACTAAGTGGCGTGGTCCAGAGGTGATTTATTTCGGTGATCACCTCTTCAGTGATCTTAGAGGACCTTCAAAAGCTGGATGGCGAACTGCTGCTATCA TCCGTGAACTAGAAAATGAAATACGTATACAGAATGGTGATCGTTACCGGTTTGAGCAGGCGAAATTCCACATCATACAAGAACTGCTAGGGAGATTGCA TTCCATTGTGCCGAAAAGTAACAGAAGCGAAACCTATGGCTTGCTCCTTAAGGAGCTGAATCAAAAGAGGCAAGAGGCGAGGGAGACGATGAGGAAGATG TTCAATGAGTCATTTGGGGCCACGTTTCTCACCGACACAGGCCAAGAATCTGCATTCGCCTATCACATTCATCAATATGCAGATGTATACACCAGCAAAC CTGAGAATTTTCTCCTATACCCACCAGAGGCATGGCTTCATGTGCCTTTCGATGTCAAAATCATGCCACATCATGTCAAGGTACATGTGTTTCGTATGAA TAAGCCCCTCTTTTCGTCAAAGCTTTCGACTGAACAAATCATCTATTTATTTCCAGGTTCCGTCAAGCTTGTGCAGCTGTAG
AA sequence Show only first row Show all	>Lus10015485 pacid=23173686 polypeptide=Lus10015485 locus=Lus10015485.g ID=Lus10015485.BGIv1.0 annot-version=v1.0 MRRSIRSVRHLVSAVGTKESTNSSAGLVGIRTRQQKLIQTTSASSLDTDRFQNRKFANFRTLATDAAATVTNSDLRIAGPLVEYQRRIASGDLVDGDNYQ LRTLTELQRLFDEIVESADACKLDRYATSEKSTRKRWLWSRFIPQSSYSPVRGLYLYGGVGTGKTMLMDLFYDQLPCSWRKKRIHFHDFMLNVHSRLQRH RGVADPLEVVAGEISDEAILLCLDEFMVTDVADALILNRLFGHLFNNGVILVATSNRNPDKLYEGGLQRDLFLPFIETLKGRCVVREIGSSVDYRKLGSA EQGFYFVGNNIAGLLKQKFQELVGKHEVRSEEVEVVMGRKLQVPFAADGCAYFKFEELCDRPLGAADYFGLFKSFHTLALEGIPILGLNNRTAAYRFVTL IDVMYENRARLLCTAEGTPFELFEKIVTIADAQQMAPRTSGRSRRNDEADLCVDNELGFAKDRTISRQRACFSLLAIREGFGGNFRSYSIAASASAEGLK SEGSDFDDEVAKIGHQFEAAKNSFLSVPESLAGMPKMNPKGIYVNKNLRLDNIQVYGFDYDYTLAHYSSNLQSLIYDLAKEHMVNERRYPEICMRFTYDP TFPIRGLYYDRKNGCLLKLDFFGSIEPDGCYFGRRKLSRKEIEEIYGTRHIGRDQARGLVGLMDFFCFSEACLIADIVQHFVDAKLEFDASYIYQDVNRA IQHVHRSGSAHRGILSNPQKYLLKNVSKMRYMLEDSIGCGDSWRDLFDVVIAKANKPDFYTSEHPFRCYDTERDTLAFTKVETFVQDKIYYHGCLKTFLE ITKWRGPEVIYFGDHLFSDLRGPSKAGWRTAAIIRELENEIRIQNGDRYRFEQAKFHIIQELLGRLHSIVPKSNRSETYGLLLKELNQKRQEARETMRKM FNESFGATFLTDTGQESAFAYHIHQYADVYTSKPENFLLYPPEAWLHVPFDVKIMPHHVKVHVFRMNKPLFSSKLSTEQIIYLFPGSVKLVQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10015485 [exp]	0	1
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004596 [exp]	3.5	0.9216
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009664 [exp]	4.4	0.9315
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10025267 [exp]	4.9	0.9019
AT1G07650			Leucine-rich repeat transmembr...		Lus10031374 [exp]	4.9	0.8986
AT1G69340			appr-1-p processing enzyme fam...		Lus10037119 [exp]	7.3	0.8946
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10014333 [exp]	10.8	0.8984
AT1G34540		CYP94D1	"cytochrome P450, family 94, s...		Lus10041637 [exp]	11.4	0.9269
AT2G37840			Protein kinase superfamily pro...		Lus10021493 [exp]	15.5	0.8765
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10032717 [exp]	18.4	0.8948
AT3G25910			Protein of unknown function (D...		Lus10043292 [exp]	18.7	0.8989

Compare expression of checked genes

Lus10015485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.