Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23945 210 / 2e-63 Eukaryotic aspartyl protease family protein (.1) AT4G30030 178 / 2e-51 Eukaryotic aspartyl protease family protein (.1) AT4G30040 165 / 2e-46 Eukaryotic aspartyl protease family protein (.1) AT2G35615 137 / 5e-36 Eukaryotic aspartyl protease family protein (.1) AT2G28040 135 / 1e-35 Eukaryotic aspartyl protease family protein (.1) AT2G28010 130 / 5e-34 Eukaryotic aspartyl protease family protein (.1) AT2G28030 130 / 6e-34 Eukaryotic aspartyl protease family protein (.1) AT1G31450 124 / 1e-31 Eukaryotic aspartyl protease family protein (.1) AT5G33340 121 / 1e-30 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT2G28220 122 / 6e-30 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019960 [exp] 702 / 0 AT2G23945 256 / 5e-81 Eukaryotic aspartyl protease family protein (.1) Lus10011615 [exp] 244 / 1e-76 AT2G23945 224 / 5e-68 Eukaryotic aspartyl protease family protein (.1) Lus10015486 [exp] 233 / 4e-71 AT2G23945 248 / 3e-76 Eukaryotic aspartyl protease family protein (.1) Lus10031450 [exp] 216 / 6e-66 AT4G30030 231 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10023451 [exp] 216 / 7e-66 AT2G23945 232 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10031449 [exp] 206 / 5e-62 AT2G23945 219 / 3e-66 Eukaryotic aspartyl protease family protein (.1) Lus10002276 [exp] 195 / 1e-57 AT2G23945 206 / 2e-61 Eukaryotic aspartyl protease family protein (.1) Lus10002275 [exp] 160 / 5e-45 AT2G23945 164 / 7e-46 Eukaryotic aspartyl protease family protein (.1) Lus10004064 [exp] 147 / 2e-38 AT4G30040 156 / 3e-41 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179500 [exp] 215 / 3e-65 AT2G23945 412 / 3e-141 Eukaryotic aspartyl protease family protein (.1) Potri.018G106500 [exp] 204 / 6e-62 AT4G30030 150 / 2e-41 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 119 / 1e-29 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 117 / 5e-29 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 117 / 7e-29 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 116 / 1e-28 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.017G131800 [exp] 113 / 1e-27 AT1G66180 570 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 112 / 3e-27 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.004G085000 [exp] 108 / 5e-26 AT1G66180 605 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014800 [exp] 103 / 3e-24 AT5G10770 312 / 9e-102 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10015487 pacid=23173677 polypeptide=Lus10015487 locus=Lus10015487.g ID=Lus10015487.BGIv1.0 annot-version=v1.0 ATGTCAACTTCCATTGGTATTCTGCTAATGCTCACAATAATAATAACTTCAAACTCTAACTGCATTGACTCTGCTCGAATAACCCTCAAACTTATCCACC ACAACTCAATCTTCTCCCCCACGGCAGTCAACCAATCATCCATACAACACCAACAACAACTGGTAGAAGCTTCTACAGAAAAGGATCATATAGGGGCAAA CCTTATCCCAGGTAGCCATTCAATCTACTACGTCAATTTCTCAATTGGGGAGCCGCCGGTGCCTCAGCTGGCCGTAATGGACACAGGGAGCAGCTTGCTC TGGGTCAAATGTCTTCCTTGCCACCCATGTTCCCCCACCTCCAACACCCGCTTCTTCGATCCCTCCAAGTCCTCCACTTTCCAACCCAAGGCGTGTGATC CCACCTGCCGGAGCTGCAATACGACCACGAACCAATGCGAGTACAACATACAATATGTGGGCGCACCATCGTCGGAAGGAATCATAGCCACAGAACAGCT GACATTCTCCACGTGGGACAGTGGATACACCGCCGTGCCGGCTGTTCAATTTGGTTGCTGTCGGAAACCTGAAGATCTACCGAGGGAGTCTCACATGAGC GGAGTAATGGGTCTCGGAGCAGAACCCGATTCGCTAGTTTGGCGGGTCGGCAAGCCGAGGAGCGCTGATGGAAGGAGTTTGGACGCCGTTAACGATCGAG AAGGGTTGTATTATGTAACCGTGGAGCGAATTAGCCTTGGTGGGTCCACTCTGGACATACCCGATTCCGCTTTCAAGAAAACTCCCGGCGTGGACGACGG GGTCATGATCGACACCGGAGCACAGTACACATACCTGAAGAAAGAAGCTTTCGAAATGGTGGAATATGCAGTCCGTGAACAGCTAAGGGGCACGAAATGG AATCGAGTGTGGATACAACAAGCAAATGGAAGGATTTGCTTTGGTGGGAGAGTCGCTGAAGTCGCTCAAAGTTTCCCGCTTCTGGGTATCCATTTCGAAG GCGGGGCGGACCTGTACCTCGACGGATTCGGAACCTTCGTGCAACTTAACTGGGACAACTTTTGCTTGGCATTCCTTGAAACTTCCGAGGGTGAAGACTC TAGTTGCATTGGTATCTTGGCTCAACAGAACTACAACGTTGGCTTTGATCTTGTTGATAAGAGAGTCTACTTCCAGAGGATTGCCTGTGAGGATCTTCAT CTATAA
AA sequence Show only first row Show all	>Lus10015487 pacid=23173677 polypeptide=Lus10015487 locus=Lus10015487.g ID=Lus10015487.BGIv1.0 annot-version=v1.0 MSTSIGILLMLTIIITSNSNCIDSARITLKLIHHNSIFSPTAVNQSSIQHQQQLVEASTEKDHIGANLIPGSHSIYYVNFSIGEPPVPQLAVMDTGSSLL WVKCLPCHPCSPTSNTRFFDPSKSSTFQPKACDPTCRSCNTTTNQCEYNIQYVGAPSSEGIIATEQLTFSTWDSGYTAVPAVQFGCCRKPEDLPRESHMS GVMGLGAEPDSLVWRVGKPRSADGRSLDAVNDREGLYYVTVERISLGGSTLDIPDSAFKKTPGVDDGVMIDTGAQYTYLKKEAFEMVEYAVREQLRGTKW NRVWIQQANGRICFGGRVAEVAQSFPLLGIHFEGGADLYLDGFGTFVQLNWDNFCLAFLETSEGEDSSCIGILAQQNYNVGFDLVDKRVYFQRIACEDLH L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23945			Eukaryotic aspartyl protease f...		Lus10015487 [exp]	0	1
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Lus10008374 [exp]	8.6	0.9007
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018195 [exp]	12.1	0.8989
					Lus10000586 [exp]	13.6	0.8948
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	15.9	0.8954
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010759 [exp]	20.4	0.8941
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10026079 [exp]	21.2	0.8915
AT3G52610			unknown protein		Lus10022698 [exp]	22.9	0.8860
AT5G16170			Core-2/I-branching beta-1,6-N-...		Lus10037154 [exp]	23.5	0.8712
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	27.4	0.8847
AT3G05950			RmlC-like cupins superfamily p...		Lus10026962 [exp]	28.1	0.7418

Compare expression of checked genes

Lus10015487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.