Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57930 0 / 1 APO2, EMB1629 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019959 [exp] 132 / 4e-37 AT5G57930 521 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10004105 [exp] 46 / 3e-06 AT5G61930 473 / 3e-167 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10013360 [exp] 46 / 3e-06 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G106400 [exp] 0 / 1 AT5G57930 510 / 8e-180 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.006G183900 [exp] 0 / 1 AT5G57930 517 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015488 pacid=23173672 polypeptide=Lus10015488 locus=Lus10015488.g ID=Lus10015488.BGIv1.0 annot-version=v1.0 ATGACGAGTTCTCATTCACATGCTTTTCATGGTCTGCAGTTTAGTTCTGATGTGATCTTAGGTCTGCAGTTCATCCAGCAACCGCACTTCAGCCCCACAT TGAATGCACAGCTCCACAACTACAGGAGCCTTCCCATAGAAGCTTTTCAGTTCACGTTTCAATTGTTGCCCACTCCCGTCAGGGAGATGCCACACGAATC TTGGTGGTATCAGGTCGTTCAGCACCGCAGCCTGCCAACCATGCTGCCCGTTTCGTTGCAGGTGCTTGTGTGCTCCCCAGATTTGCACCTTGTGCCTACA TGGACTTCCGGACAGTACCCGCAGACTCTTACGGGATACATTTTCCTAAGTCTGTTACAACCTTTCGTCATTTTCTCCGAAGCCGCTAAGGTCTCTTCGG AAAGCAAGGTTGTTTCTTCTTGA
AA sequence Show only first row Show all	>Lus10015488 pacid=23173672 polypeptide=Lus10015488 locus=Lus10015488.g ID=Lus10015488.BGIv1.0 annot-version=v1.0 MTSSHSHAFHGLQFSSDVILGLQFIQQPHFSPTLNAQLHNYRSLPIEAFQFTFQLLPTPVREMPHESWWYQVVQHRSLPTMLPVSLQVLVCSPDLHLVPT WTSGQYPQTLTGYIFLSLLQPFVIFSEAAKVSSESKVVSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015488 [exp]	0	1
AT1G53200			unknown protein		Lus10005971 [exp]	1.4	0.9196
					Lus10041941 [exp]	2.4	0.9106
AT1G48320			Thioesterase superfamily prote...		Lus10036869 [exp]	4.2	0.9039
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	4.4	0.9338
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10004841 [exp]	4.9	0.9194
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031424 [exp]	5.5	0.9005
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10009489 [exp]	6.3	0.9040
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023453 [exp]	6.3	0.8893
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10037510 [exp]	7.5	0.8897
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039577 [exp]	8.1	0.8856

Compare expression of checked genes

Lus10015488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.